Wall clock time and date at job start Mon Mar 30 2020 01:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30961 * 1 3 3 Si 1.86793 * 120.00256 * 2 1 4 4 H 1.48506 * 109.47056 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47112 * 299.99885 * 3 2 1 6 6 H 1.48493 * 109.47292 * 60.00258 * 3 2 1 7 7 C 1.39954 * 119.99576 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99890 * 179.97438 * 7 2 1 9 9 C 1.39948 * 119.99947 * 0.02562 * 7 2 1 10 10 C 1.39625 * 127.07879 * 0.02562 * 9 7 2 11 11 N 1.32783 * 107.74180 * 179.72049 * 10 9 7 12 12 C 1.32595 * 110.29956 * 359.88640 * 11 10 9 13 13 N 1.36033 * 108.46588 * 0.45628 * 12 11 10 14 14 C 1.47222 * 108.27954 * 179.24043 * 13 12 11 15 15 C 1.54685 * 102.38530 * 344.75260 * 14 13 12 16 16 O 1.35727 * 139.97181 * 181.03674 * 12 11 10 17 17 H 0.97007 * 119.99372 * 359.97438 * 1 2 3 18 18 H 1.07998 * 126.12899 * 359.71299 * 10 9 7 19 19 H 1.09002 * 110.86002 * 103.03540 * 14 13 12 20 20 H 1.08996 * 110.85607 * 226.47820 * 14 13 12 21 21 H 1.09001 * 110.84858 * 143.05345 * 15 14 13 22 22 H 1.08994 * 110.85329 * 266.68770 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2436 1.6176 0.0000 4 1 3.7037 1.3462 -0.0006 5 1 1.8849 2.3963 -1.2125 6 1 1.8850 2.3963 1.2125 7 6 2.0093 -1.2121 -0.0005 8 1 3.0893 -1.2121 -0.0010 9 6 1.3094 -2.4240 -0.0016 10 6 -0.0762 -2.5960 -0.0028 11 7 -0.3220 -3.9008 -0.0097 12 6 0.8150 -4.5831 -0.0156 13 7 1.8483 -3.6985 -0.0022 14 6 3.1081 -4.4602 0.0098 15 6 2.6335 -5.8802 0.3985 16 8 1.2570 -5.8661 -0.0394 17 1 -0.4849 0.8402 0.0004 18 1 -0.8155 -1.8087 0.0014 19 1 3.5700 -4.4621 -0.9775 20 1 3.7950 -4.0626 0.7569 21 1 3.2057 -6.6399 -0.1341 22 1 2.6976 -6.0292 1.4763 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213656152.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:12 Heat of formation + Delta-G solvation = 42.276946 kcal Electronic energy + Delta-G solvation = -10529.366806 eV Core-core repulsion = 8472.752247 eV Total energy + Delta-G solvation = -2056.614559 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.83482 -37.31939 -33.55894 -32.40539 -28.80717 -27.90032 -24.58815 -22.51136 -20.06412 -19.71068 -17.33165 -16.34685 -15.43303 -15.07498 -14.17896 -13.85125 -13.07228 -12.67428 -12.46194 -11.93886 -11.46700 -11.33549 -11.11585 -10.72954 -10.23259 -10.19751 -9.31738 -8.29082 -8.25312 -6.76868 -6.68516 -4.23711 2.90978 3.06272 3.10972 3.45072 3.69461 3.89242 4.18846 4.63284 4.87856 5.20806 5.34993 5.51099 5.61259 5.95089 6.48155 6.85351 7.08150 7.49441 7.73553 8.06670 8.39804 8.81674 8.94986 8.99825 9.82361 10.27715 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.076348 B = 0.013607 C = 0.011676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.656132 B = 2057.344482 C = 2397.593953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.071 3.929 3 Si 0.929 3.071 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.441 4.441 8 H 0.071 0.929 9 C 0.203 3.797 10 C -0.118 4.118 11 N -0.456 5.456 12 C 0.217 3.783 13 N -0.539 5.539 14 C 0.088 3.912 15 C 0.049 3.951 16 O -0.285 6.285 17 H 0.280 0.720 18 H 0.200 0.800 19 H 0.078 0.922 20 H 0.085 0.915 21 H 0.108 0.892 22 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.901 -2.307 0.693 7.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.146 4.146 3 Si 0.754 3.246 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.476 4.476 8 H 0.089 0.911 9 C 0.095 3.905 10 C -0.266 4.266 11 N -0.186 5.186 12 C -0.072 4.072 13 N -0.246 5.246 14 C -0.035 4.035 15 C -0.028 4.028 16 O -0.192 6.192 17 H 0.092 0.908 18 H 0.216 0.784 19 H 0.096 0.904 20 H 0.103 0.897 21 H 0.126 0.874 22 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.993 -2.703 0.628 6.604 hybrid contribution 1.543 1.064 0.070 1.875 sum 7.536 -1.640 0.699 7.744 Atomic orbital electron populations 1.69598 1.07246 1.28691 1.37500 1.25652 0.94932 1.00783 0.93193 0.85926 0.79954 0.80203 0.78540 1.18912 1.19827 1.19835 1.18352 0.93939 0.88376 1.46955 0.91090 1.18512 0.92299 0.80108 0.99554 1.23479 0.93634 0.89184 1.20259 1.69544 1.22165 1.06041 1.20833 1.21730 0.86530 0.79932 1.19026 1.46633 1.05853 1.07723 1.64365 1.22582 0.87639 0.90888 1.02409 1.24091 0.81590 0.96669 1.00458 1.86857 1.26746 1.21044 1.84570 0.90838 0.78393 0.90406 0.89713 0.87368 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.93 10.34 55.55 0.57 -20.36 14 2 C 0.07 1.78 5.50 -17.28 -0.09 1.69 14 3 Si 0.93 18.75 29.56 -169.99 -5.03 13.73 14 4 H -0.27 -5.27 7.11 56.52 0.40 -4.86 14 5 H -0.27 -5.41 7.11 56.52 0.40 -5.01 14 6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 14 7 C -0.44 -11.90 9.44 -38.30 -0.36 -12.26 14 8 H 0.07 1.81 7.85 -52.49 -0.41 1.40 14 9 C 0.20 5.76 6.96 -83.75 -0.58 5.18 14 10 C -0.12 -3.48 10.87 -16.62 -0.18 -3.66 14 11 N -0.46 -13.31 11.21 -13.38 -0.15 -13.46 14 12 C 0.22 5.80 9.41 -87.69 -0.82 4.98 14 13 N -0.54 -13.70 3.85 -113.83 -0.44 -14.14 14 14 C 0.09 1.61 8.09 -2.76 -0.02 1.59 14 15 C 0.05 0.79 8.12 38.04 0.31 1.09 14 16 O -0.28 -6.43 11.18 -18.89 -0.21 -6.64 14 17 H 0.28 6.57 8.30 -40.82 -0.34 6.23 14 18 H 0.20 5.87 5.76 -52.49 -0.30 5.57 14 19 H 0.08 1.28 8.14 -51.93 -0.42 0.86 14 20 H 0.08 1.36 8.14 -51.93 -0.42 0.94 14 21 H 0.11 1.25 8.14 -51.93 -0.42 0.83 14 22 H 0.07 1.06 8.14 -51.93 -0.42 0.64 14 LS Contribution 200.32 15.07 3.02 3.02 Total: -1.00 -32.11 200.32 -5.53 -37.64 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -1.54 Total: 1.59 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -1.76 Total: -1.39 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: -0.01 Total: -47.95 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.21 Total: -6.64 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 3.02 Total: 3.02 kcal Total: -32.11 -5.53 -37.64 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213656152.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.920 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds