Wall clock time and date at job start Mon Mar 30 2020 01:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30794 * 1 3 3 Si 1.86803 * 119.99912 * 2 1 4 4 H 1.48498 * 109.47168 * 274.98547 * 3 2 1 5 5 H 1.48502 * 109.46892 * 34.98256 * 3 2 1 6 6 H 1.48496 * 109.47165 * 154.98094 * 3 2 1 7 7 C 1.40123 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99918 * 186.05916 * 7 2 1 9 9 C 1.39712 * 119.99840 * 6.06191 * 7 2 1 10 10 N 1.33096 * 125.85950 * 354.26203 * 9 7 2 11 11 C 1.32565 * 109.44408 * 179.69392 * 10 9 7 12 12 C 1.38743 * 108.48249 * 359.80649 * 11 10 9 13 13 N 1.36615 * 106.35980 * 0.59704 * 12 11 10 14 14 C 1.47216 * 107.98013 * 179.11295 * 13 12 11 15 15 C 1.54684 * 102.32296 * 344.73415 * 14 13 12 16 16 O 1.35510 * 141.89297 * 180.63486 * 12 11 10 17 17 H 0.96994 * 119.99914 * 359.97438 * 1 2 3 18 18 H 1.08007 * 125.75416 * 179.84247 * 11 10 9 19 19 H 1.08997 * 110.83847 * 226.52268 * 14 13 12 20 20 H 1.08998 * 111.00344 * 103.01878 * 14 13 12 21 21 H 1.09007 * 110.83498 * 266.57040 * 15 14 13 22 22 H 1.09003 * 111.01051 * 143.07110 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 2.3841 2.1073 -1.3948 5 1 1.4959 2.6200 0.8027 6 1 3.5881 1.4121 0.5921 7 6 2.0086 -1.2135 -0.0005 8 1 3.0841 -1.2161 0.0982 9 6 1.3159 -2.4200 -0.1289 10 7 -0.0075 -2.5608 -0.1497 11 6 -0.3126 -3.8431 -0.2907 12 6 0.8667 -4.5698 -0.3696 13 7 1.8843 -3.6654 -0.2557 14 6 3.1568 -4.4034 -0.3135 15 6 2.7028 -5.8631 -0.0772 16 8 1.3325 -5.8337 -0.5173 17 1 -0.4850 0.8400 0.0004 18 1 -1.3108 -4.2529 -0.3371 19 1 3.8319 -4.0747 0.4765 20 1 3.6261 -4.2969 -1.2914 21 1 2.7651 -6.1223 0.9798 22 1 3.2889 -6.5571 -0.6799 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213656318.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:04 Heat of formation + Delta-G solvation = 43.250584 kcal Electronic energy + Delta-G solvation = -10527.063737 eV Core-core repulsion = 8470.491398 eV Total energy + Delta-G solvation = -2056.572339 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.84973 -37.31440 -33.25735 -32.22519 -28.40067 -28.27472 -24.43522 -22.63698 -20.15753 -19.71979 -17.19815 -16.23989 -15.34965 -15.04357 -14.25488 -13.70719 -13.06881 -12.53183 -12.48303 -11.79305 -11.39627 -11.22565 -11.20847 -10.54499 -10.30703 -10.17359 -9.09180 -8.10959 -8.09252 -6.75112 -6.44129 -4.23936 3.02235 3.14718 3.17833 3.47597 3.83265 4.07066 4.32393 4.62433 4.99179 5.25912 5.55765 5.57640 5.72155 6.03597 6.36944 6.79034 7.07747 7.21777 7.48222 8.03431 8.21112 8.56988 8.95290 9.19583 10.10501 10.49351 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.075831 B = 0.013728 C = 0.011756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.153124 B = 2039.116061 C = 2381.176252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.081 3.919 3 Si 0.914 3.086 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.460 4.460 8 H 0.077 0.923 9 C 0.402 3.598 10 N -0.493 5.493 11 C 0.003 3.997 12 C -0.006 4.006 13 N -0.548 5.548 14 C 0.091 3.909 15 C 0.045 3.955 16 O -0.294 6.294 17 H 0.274 0.726 18 H 0.145 0.855 19 H 0.083 0.917 20 H 0.075 0.925 21 H 0.067 0.933 22 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.871 -3.933 0.108 7.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.500 4.500 8 H 0.095 0.905 9 C 0.163 3.837 10 N -0.216 5.216 11 C -0.149 4.149 12 C -0.159 4.159 13 N -0.250 5.250 14 C -0.033 4.033 15 C -0.031 4.031 16 O -0.205 6.205 17 H 0.085 0.915 18 H 0.163 0.837 19 H 0.101 0.899 20 H 0.093 0.907 21 H 0.085 0.915 22 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.122 -3.335 0.109 6.113 hybrid contribution 1.294 -0.039 -0.029 1.295 sum 6.416 -3.374 0.080 7.250 Atomic orbital electron populations 1.70046 1.06879 1.27844 1.31981 1.25689 0.94807 1.00210 0.93565 0.86222 0.80088 0.80951 0.78849 1.19656 1.20167 1.18922 1.18044 0.94012 0.87728 1.50194 0.90460 1.19574 0.86511 0.81322 0.96309 1.71448 1.09084 1.12424 1.28632 1.21705 0.92882 0.89581 1.10698 1.21581 0.92359 0.78957 1.23002 1.47134 1.04972 1.08621 1.64310 1.22550 0.87508 0.90921 1.02362 1.23939 0.82832 0.96097 1.00268 1.86700 1.25924 1.25459 1.82456 0.91540 0.83727 0.89911 0.90684 0.91456 0.88243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.85 11.91 55.56 0.66 -20.19 14 2 C 0.08 2.15 5.49 -17.29 -0.09 2.05 14 3 Si 0.91 19.24 29.57 -169.99 -5.03 14.21 14 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 14 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 14 6 H -0.27 -5.42 7.11 56.52 0.40 -5.02 14 7 C -0.46 -12.80 9.43 -38.32 -0.36 -13.16 14 8 H 0.08 2.00 7.86 -52.49 -0.41 1.59 14 9 C 0.40 11.62 7.59 -155.66 -1.18 10.44 14 10 N -0.49 -14.73 9.39 -12.21 -0.11 -14.84 14 11 C 0.00 0.07 11.95 -17.05 -0.20 -0.13 14 12 C -0.01 -0.16 8.44 -15.23 -0.13 -0.29 14 13 N -0.55 -13.89 3.87 -114.16 -0.44 -14.34 14 14 C 0.09 1.70 8.10 -2.77 -0.02 1.68 14 15 C 0.05 0.75 8.08 38.04 0.31 1.06 14 16 O -0.29 -6.47 11.16 -18.22 -0.20 -6.68 14 17 H 0.27 6.94 8.29 -40.82 -0.34 6.60 14 18 H 0.15 3.40 8.06 -52.48 -0.42 2.98 14 19 H 0.08 1.38 8.14 -51.93 -0.42 0.95 14 20 H 0.07 1.28 8.14 -51.93 -0.42 0.86 14 21 H 0.07 1.01 8.14 -51.92 -0.42 0.59 14 22 H 0.10 1.24 8.14 -51.93 -0.42 0.82 14 LS Contribution 203.06 15.07 3.06 3.06 Total: -1.00 -32.86 203.06 -5.41 -38.27 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -1.66 Total: -1.13 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -1.69 Total: 1.65 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.11 Total: -49.37 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.20 Total: -6.68 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 3.06 Total: 3.06 kcal Total: -32.86 -5.41 -38.27 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213656318.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.517 kcal (2) G-P(sol) polarization free energy of solvation -32.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds