Wall clock time and date at job start Mon Mar 30 2020 01:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30794 * 1 3 3 Si 1.86803 * 119.99912 * 2 1 4 4 H 1.48498 * 109.47168 * 274.98547 * 3 2 1 5 5 H 1.48502 * 109.46892 * 34.98256 * 3 2 1 6 6 H 1.48496 * 109.47165 * 154.98094 * 3 2 1 7 7 C 1.40123 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99918 * 186.05916 * 7 2 1 9 9 C 1.39712 * 119.99840 * 6.06191 * 7 2 1 10 10 N 1.33096 * 125.85950 * 354.26203 * 9 7 2 11 11 C 1.32565 * 109.44408 * 179.69392 * 10 9 7 12 12 C 1.38743 * 108.48249 * 359.80649 * 11 10 9 13 13 N 1.36615 * 106.35980 * 0.59704 * 12 11 10 14 14 C 1.47216 * 107.98013 * 179.11295 * 13 12 11 15 15 C 1.54684 * 102.32296 * 344.73415 * 14 13 12 16 16 O 1.35510 * 141.89297 * 180.63486 * 12 11 10 17 17 H 0.96994 * 119.99914 * 359.97438 * 1 2 3 18 18 H 1.08007 * 125.75416 * 179.84247 * 11 10 9 19 19 H 1.08997 * 110.83847 * 226.52268 * 14 13 12 20 20 H 1.08998 * 111.00344 * 103.01878 * 14 13 12 21 21 H 1.09007 * 110.83498 * 266.57040 * 15 14 13 22 22 H 1.09003 * 111.01051 * 143.07110 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 2.3841 2.1073 -1.3948 5 1 1.4959 2.6200 0.8027 6 1 3.5881 1.4121 0.5921 7 6 2.0086 -1.2135 -0.0005 8 1 3.0841 -1.2161 0.0982 9 6 1.3159 -2.4200 -0.1289 10 7 -0.0075 -2.5608 -0.1497 11 6 -0.3126 -3.8431 -0.2907 12 6 0.8667 -4.5698 -0.3696 13 7 1.8843 -3.6654 -0.2557 14 6 3.1568 -4.4034 -0.3135 15 6 2.7028 -5.8631 -0.0772 16 8 1.3325 -5.8337 -0.5173 17 1 -0.4850 0.8400 0.0004 18 1 -1.3108 -4.2529 -0.3371 19 1 3.8319 -4.0747 0.4765 20 1 3.6261 -4.2969 -1.2914 21 1 2.7651 -6.1223 0.9798 22 1 3.2889 -6.5571 -0.6799 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213656318.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:04 Heat of formation + Delta-G solvation = 19.414870 kcal Electronic energy + Delta-G solvation = -10528.097331 eV Core-core repulsion = 8470.491398 eV Total energy + Delta-G solvation = -2057.605933 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.72330 -39.14145 -35.23420 -34.00891 -30.30770 -30.07656 -26.42005 -24.19088 -22.13699 -21.63538 -19.09783 -17.86644 -17.29700 -16.76883 -15.95760 -15.50400 -14.75335 -14.40143 -14.13873 -13.66873 -13.01905 -12.91662 -12.85681 -12.49167 -11.93632 -11.88902 -10.99326 -10.15723 -10.03294 -8.77187 -8.39077 -6.29762 1.29196 1.44080 1.59861 1.65528 2.05253 2.31370 2.57172 2.75005 3.47071 3.57120 3.98962 4.14464 4.39669 4.49933 4.66832 5.01240 5.11581 5.28028 5.55066 6.03770 6.21251 6.61730 6.95214 7.21606 8.07460 8.57740 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.075831 B = 0.013728 C = 0.011756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.153124 B = 2039.116061 C = 2381.176252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.032 3.968 3 Si 1.001 2.999 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.253 1.253 7 C -0.490 4.490 8 H 0.088 0.912 9 C 0.367 3.633 10 N -0.534 5.534 11 C -0.040 4.040 12 C 0.012 3.988 13 N -0.556 5.556 14 C 0.077 3.923 15 C 0.047 3.953 16 O -0.304 6.304 17 H 0.280 0.720 18 H 0.162 0.838 19 H 0.105 0.895 20 H 0.093 0.907 21 H 0.087 0.913 22 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.965 -4.272 0.098 9.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.188 4.188 3 Si 0.820 3.180 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.176 1.176 7 C -0.529 4.529 8 H 0.106 0.894 9 C 0.126 3.874 10 N -0.257 5.257 11 C -0.190 4.190 12 C -0.143 4.143 13 N -0.258 5.258 14 C -0.045 4.045 15 C -0.028 4.028 16 O -0.215 6.215 17 H 0.090 0.910 18 H 0.180 0.820 19 H 0.123 0.877 20 H 0.112 0.888 21 H 0.105 0.895 22 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.245 -3.733 0.100 8.151 hybrid contribution 0.704 -0.140 -0.036 0.719 sum 7.949 -3.873 0.064 8.842 Atomic orbital electron populations 1.70174 1.08993 1.29349 1.33110 1.26806 0.95659 1.04094 0.92226 0.84939 0.78741 0.75179 0.79113 1.18977 1.19358 1.17644 1.18480 0.94687 0.88368 1.51407 0.89380 1.19893 0.86925 0.82866 0.97763 1.71317 1.10581 1.14237 1.29596 1.22041 0.94522 0.89447 1.13006 1.21704 0.92261 0.80432 1.19877 1.47408 1.07398 1.07856 1.63128 1.23074 0.85616 0.91396 1.04383 1.24418 0.80091 0.95685 1.02649 1.86689 1.28794 1.23270 1.82730 0.90978 0.82046 0.87728 0.88848 0.89524 0.83136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -45.51 11.91 21.86 0.26 -45.25 14 2 C 0.03 1.68 5.49 85.30 0.47 2.15 14 3 Si 1.00 39.24 29.57 68.60 2.03 41.27 14 4 H -0.26 -10.03 7.11 99.48 0.71 -9.32 14 5 H -0.27 -10.10 7.11 99.48 0.71 -9.39 14 6 H -0.25 -9.31 7.11 99.48 0.71 -8.60 14 7 C -0.49 -27.51 9.43 23.08 0.22 -27.29 14 8 H 0.09 4.53 7.86 -2.91 -0.02 4.50 14 9 C 0.37 21.57 7.59 133.50 1.01 22.58 14 10 N -0.53 -32.91 9.39 -192.54 -1.81 -34.72 14 11 C -0.04 -2.21 11.95 84.70 1.01 -1.19 14 12 C 0.01 0.60 8.44 84.07 0.71 1.31 14 13 N -0.56 -27.82 3.87 -625.73 -2.42 -30.23 14 14 C 0.08 2.66 8.10 86.82 0.70 3.37 14 15 C 0.05 1.35 8.08 72.56 0.59 1.94 14 16 O -0.30 -12.63 11.16 -88.12 -0.98 -13.61 14 17 H 0.28 14.52 8.29 -92.71 -0.77 13.75 14 18 H 0.16 7.83 8.06 -2.91 -0.02 7.81 14 19 H 0.10 3.14 8.14 -2.39 -0.02 3.12 14 20 H 0.09 2.88 8.14 -2.39 -0.02 2.87 14 21 H 0.09 2.23 8.14 -2.38 -0.02 2.21 14 22 H 0.15 2.87 8.14 -2.39 -0.02 2.85 14 Total: -1.00 -72.90 203.06 3.02 -69.88 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 1.23 Total: 9.81 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 4.71 Total: 2.85 kcal Atomic # 7 Polarization: -106.23 SS G_CDS: -3.97 Total: -110.20 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -0.98 Total: -13.61 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal Total: -72.90 3.02 -69.88 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213656318.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.298 kcal (2) G-P(sol) polarization free energy of solvation -72.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds