Wall clock time and date at job start Mon Mar 30 2020 01:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86798 * 119.99905 * 2 1 4 4 H 1.48498 * 109.47148 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.46977 * 299.99676 * 3 2 1 6 6 H 1.48501 * 109.47487 * 59.99605 * 3 2 1 7 7 C 1.39942 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99658 * 197.86327 * 7 2 1 9 9 C 1.41397 * 120.00058 * 17.87057 * 7 2 1 10 10 C 1.40730 * 120.24580 * 24.37725 * 9 7 2 11 11 C 1.37591 * 119.74738 * 179.97438 * 10 9 7 12 12 C 1.38667 * 120.24689 * 0.27182 * 11 10 9 13 13 C 1.38610 * 120.49841 * 359.45068 * 12 11 10 14 14 C 1.50697 * 119.87398 * 180.30189 * 13 12 11 15 15 F 1.39897 * 109.47050 * 270.24620 * 14 13 12 16 16 C 1.37644 * 120.24825 * 0.54947 * 13 12 11 17 17 H 0.96999 * 120.00195 * 0.02562 * 1 2 3 18 18 H 1.07999 * 120.12359 * 359.97438 * 10 9 7 19 19 H 1.08001 * 119.88212 * 179.97438 * 11 10 9 20 20 H 1.07999 * 119.74866 * 179.72447 * 12 11 10 21 21 H 1.09005 * 109.47319 * 30.24785 * 14 13 12 22 22 H 1.09002 * 109.47316 * 150.25079 * 14 13 12 23 23 H 1.08005 * 120.12522 * 179.74899 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8835 2.3965 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2343 0.2875 9 6 1.3522 -2.4071 -0.3747 10 6 0.2209 -2.3625 -1.2106 11 6 -0.4090 -3.5319 -1.5697 12 6 0.0635 -4.7506 -1.1067 13 6 1.1802 -4.8068 -0.2876 14 6 1.6857 -6.1394 0.2020 15 9 1.0631 -6.4577 1.4136 16 6 1.8262 -3.6497 0.0844 17 1 -0.4850 0.8400 -0.0004 18 1 -0.1514 -1.4141 -1.5687 19 1 -1.2776 -3.5002 -2.2108 20 1 -0.4398 -5.6631 -1.3901 21 1 1.4579 -6.9080 -0.5366 22 1 2.7643 -6.0866 0.3506 23 1 2.6938 -3.6955 0.7261 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213656776.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:52 Heat of formation + Delta-G solvation = -47.457652 kcal Electronic energy + Delta-G solvation = -10079.936416 eV Core-core repulsion = 7999.510711 eV Total energy + Delta-G solvation = -2080.425705 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.065 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -46.95929 -37.53478 -33.82159 -30.69035 -29.88102 -25.53119 -25.00682 -20.80059 -20.22369 -17.15459 -15.49113 -15.20746 -15.18521 -14.69800 -14.34199 -13.18632 -13.08996 -12.40031 -11.66995 -11.34335 -11.17799 -10.89223 -10.77312 -10.47938 -10.38597 -9.58102 -9.43402 -9.18880 -7.54630 -7.44004 -6.79004 -4.39301 2.72731 2.85943 3.06159 3.11515 3.17727 3.91450 4.56542 5.45486 5.48972 5.51971 5.67750 6.29169 6.36234 6.43620 6.86710 7.01242 7.16890 7.29954 7.51065 7.80485 7.99228 8.01296 8.21020 8.58652 8.84857 8.91762 10.16348 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.067671 B = 0.011585 C = 0.010504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.666941 B = 2416.298887 C = 2665.013132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.463 4.463 8 H 0.079 0.921 9 C 0.105 3.895 10 C -0.156 4.156 11 C -0.108 4.108 12 C -0.221 4.221 13 C -0.116 4.116 14 C 0.112 3.888 15 F -0.223 7.223 16 C -0.202 4.202 17 H 0.280 0.720 18 H 0.120 0.880 19 H 0.090 0.910 20 H 0.088 0.912 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.085 -2.837 -1.465 3.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.493 4.493 8 H 0.097 0.903 9 C 0.103 3.897 10 C -0.176 4.176 11 C -0.127 4.127 12 C -0.241 4.241 13 C -0.116 4.116 14 C 0.058 3.942 15 F -0.204 7.204 16 C -0.222 4.222 17 H 0.091 0.909 18 H 0.137 0.863 19 H 0.109 0.891 20 H 0.107 0.893 21 H 0.086 0.914 22 H 0.088 0.912 23 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.873 -2.682 -1.416 3.565 hybrid contribution 0.201 0.791 0.096 0.822 sum 2.074 -1.891 -1.320 3.102 Atomic orbital electron populations 1.69833 1.07631 1.29186 1.35279 1.25918 0.94718 1.01377 0.92193 0.86259 0.80996 0.80890 0.78565 1.18370 1.19689 1.19974 1.19599 0.98193 0.91181 1.40311 0.90320 1.17610 0.91321 0.91934 0.88829 1.21401 0.99011 0.96892 1.00266 1.20683 0.98764 0.93201 1.00026 1.20219 1.00186 0.96448 1.07229 1.19624 0.97986 0.93510 1.00530 1.20765 0.96199 0.95568 0.81717 1.92741 1.85294 1.94076 1.48268 1.20852 1.03422 0.92254 1.05658 0.90866 0.86250 0.89136 0.89346 0.91430 0.91242 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.70 10.95 55.55 0.61 -20.09 14 2 C 0.08 1.91 5.14 -17.34 -0.09 1.82 14 3 Si 0.91 18.65 29.59 -169.99 -5.03 13.62 14 4 H -0.26 -5.28 7.11 56.52 0.40 -4.87 14 5 H -0.27 -5.46 7.11 56.52 0.40 -5.06 14 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 14 7 C -0.46 -12.39 9.05 -37.74 -0.34 -12.73 14 8 H 0.08 2.02 7.91 -52.49 -0.41 1.60 14 9 C 0.11 2.85 5.57 -106.83 -0.60 2.26 14 10 C -0.16 -4.12 8.70 -38.88 -0.34 -4.46 14 11 C -0.11 -2.59 10.02 -39.66 -0.40 -2.99 14 12 C -0.22 -5.06 9.70 -39.29 -0.38 -5.45 14 13 C -0.12 -2.65 5.59 -104.70 -0.59 -3.24 14 14 C 0.11 2.07 7.66 36.00 0.28 2.35 14 15 F -0.22 -4.53 17.34 2.25 0.04 -4.49 14 16 C -0.20 -5.06 9.44 -38.87 -0.37 -5.42 14 17 H 0.28 6.60 8.30 -40.82 -0.34 6.26 14 18 H 0.12 3.21 6.15 -52.49 -0.32 2.89 14 19 H 0.09 1.91 8.06 -52.49 -0.42 1.49 14 20 H 0.09 1.79 8.06 -52.49 -0.42 1.36 14 21 H 0.07 1.06 8.09 -51.93 -0.42 0.64 14 22 H 0.07 1.13 8.08 -51.93 -0.42 0.71 14 23 H 0.09 2.21 8.06 -52.48 -0.42 1.79 14 LS Contribution 212.79 15.07 3.21 3.21 Total: -1.00 -27.97 212.79 -5.98 -33.95 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -1.98 Total: 1.66 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: -2.82 Total: -27.86 kcal Atomic # 7 Polarization: -20.70 SS G_CDS: 0.61 Total: -20.09 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.04 Total: -4.49 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 3.21 Total: 3.21 kcal Total: -27.97 -5.98 -33.95 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213656776.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.513 kcal (2) G-P(sol) polarization free energy of solvation -27.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds