Wall clock time and date at job start Mon Mar 30 2020 01:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86798 * 119.99905 * 2 1 4 4 H 1.48498 * 109.47148 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.46977 * 299.99676 * 3 2 1 6 6 H 1.48501 * 109.47487 * 59.99605 * 3 2 1 7 7 C 1.39942 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99658 * 197.86327 * 7 2 1 9 9 C 1.41397 * 120.00058 * 17.87057 * 7 2 1 10 10 C 1.40730 * 120.24580 * 24.37725 * 9 7 2 11 11 C 1.37591 * 119.74738 * 179.97438 * 10 9 7 12 12 C 1.38667 * 120.24689 * 0.27182 * 11 10 9 13 13 C 1.38610 * 120.49841 * 359.45068 * 12 11 10 14 14 C 1.50697 * 119.87398 * 180.30189 * 13 12 11 15 15 F 1.39897 * 109.47050 * 270.24620 * 14 13 12 16 16 C 1.37644 * 120.24825 * 0.54947 * 13 12 11 17 17 H 0.96999 * 120.00195 * 0.02562 * 1 2 3 18 18 H 1.07999 * 120.12359 * 359.97438 * 10 9 7 19 19 H 1.08001 * 119.88212 * 179.97438 * 11 10 9 20 20 H 1.07999 * 119.74866 * 179.72447 * 12 11 10 21 21 H 1.09005 * 109.47319 * 30.24785 * 14 13 12 22 22 H 1.09002 * 109.47316 * 150.25079 * 14 13 12 23 23 H 1.08005 * 120.12522 * 179.74899 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8835 2.3965 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2343 0.2875 9 6 1.3522 -2.4071 -0.3747 10 6 0.2209 -2.3625 -1.2106 11 6 -0.4090 -3.5319 -1.5697 12 6 0.0635 -4.7506 -1.1067 13 6 1.1802 -4.8068 -0.2876 14 6 1.6857 -6.1394 0.2020 15 9 1.0631 -6.4577 1.4136 16 6 1.8262 -3.6497 0.0844 17 1 -0.4850 0.8400 -0.0004 18 1 -0.1514 -1.4141 -1.5687 19 1 -1.2776 -3.5002 -2.2108 20 1 -0.4398 -5.6631 -1.3901 21 1 1.4579 -6.9080 -0.5366 22 1 2.7643 -6.0866 0.3506 23 1 2.6938 -3.6955 0.7261 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213656776.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:52 Heat of formation + Delta-G solvation = -62.455472 kcal Electronic energy + Delta-G solvation = -10080.586770 eV Core-core repulsion = 7999.510711 eV Total energy + Delta-G solvation = -2081.076059 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.065 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.49154 -39.40525 -35.70858 -32.48005 -31.79444 -27.38556 -26.73462 -22.68541 -22.06218 -19.03661 -17.34599 -16.79228 -16.70700 -16.38384 -16.12033 -15.00752 -14.84540 -14.19824 -13.51750 -13.08645 -12.98364 -12.65429 -12.54068 -12.14392 -11.90591 -11.38071 -11.26753 -11.06525 -9.45916 -9.35845 -8.67285 -6.38917 0.90710 0.96026 1.37628 1.48956 1.53521 2.19738 2.67516 3.62528 3.95705 4.10257 4.11959 4.50197 4.65844 4.90509 4.98235 5.08272 5.24060 5.41714 5.62193 5.92844 6.04513 6.10041 6.29817 6.64237 6.89281 6.97519 8.30871 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.067671 B = 0.011585 C = 0.010504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.666941 B = 2416.298887 C = 2665.013132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.034 3.966 3 Si 0.985 3.015 4 H -0.257 1.257 5 H -0.263 1.263 6 H -0.266 1.266 7 C -0.501 4.501 8 H 0.077 0.923 9 C 0.072 3.928 10 C -0.185 4.185 11 C -0.112 4.112 12 C -0.222 4.222 13 C -0.120 4.120 14 C 0.113 3.887 15 F -0.233 7.233 16 C -0.222 4.222 17 H 0.289 0.711 18 H 0.104 0.896 19 H 0.115 0.885 20 H 0.123 0.877 21 H 0.105 0.895 22 H 0.093 0.907 23 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.389 -3.489 -1.694 4.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.181 1.181 5 H -0.187 1.187 6 H -0.191 1.191 7 C -0.531 4.531 8 H 0.095 0.905 9 C 0.070 3.930 10 C -0.205 4.205 11 C -0.131 4.131 12 C -0.241 4.241 13 C -0.120 4.120 14 C 0.059 3.941 15 F -0.214 7.214 16 C -0.242 4.242 17 H 0.100 0.900 18 H 0.121 0.879 19 H 0.134 0.866 20 H 0.141 0.859 21 H 0.123 0.877 22 H 0.111 0.889 23 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.171 -3.357 -1.646 4.323 hybrid contribution 0.055 0.881 0.152 0.896 sum 2.226 -2.476 -1.494 3.649 Atomic orbital electron populations 1.69882 1.09132 1.30632 1.35700 1.26804 0.95494 1.04678 0.91082 0.85119 0.79407 0.75935 0.78986 1.18061 1.18734 1.19069 1.19868 0.98449 0.92479 1.42256 0.90502 1.18016 0.92176 0.93151 0.89634 1.21395 1.00023 0.97327 1.01705 1.21021 0.99191 0.92950 0.99905 1.20682 0.99952 0.97255 1.06207 1.20138 0.97372 0.95041 0.99489 1.20949 0.97303 0.93966 0.81915 1.92721 1.85639 1.93949 1.49100 1.21087 1.04168 0.92665 1.06276 0.90036 0.87853 0.86650 0.85944 0.87696 0.88924 0.88261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.02 10.95 21.83 0.24 -43.78 14 2 C 0.03 1.74 5.14 85.25 0.44 2.18 14 3 Si 0.99 38.44 29.59 68.60 2.03 40.47 14 4 H -0.26 -9.79 7.11 99.48 0.71 -9.08 14 5 H -0.26 -9.79 7.11 99.48 0.71 -9.08 14 6 H -0.27 -9.94 7.11 99.48 0.71 -9.23 14 7 C -0.50 -27.54 9.05 23.46 0.21 -27.33 14 8 H 0.08 4.06 7.91 -2.91 -0.02 4.04 14 9 C 0.07 4.01 5.57 -21.29 -0.12 3.89 14 10 C -0.18 -9.95 8.70 22.73 0.20 -9.75 14 11 C -0.11 -5.28 10.02 22.22 0.22 -5.05 14 12 C -0.22 -9.62 9.70 22.46 0.22 -9.41 14 13 C -0.12 -5.26 5.59 -19.92 -0.11 -5.37 14 14 C 0.11 3.78 7.66 71.24 0.55 4.33 14 15 F -0.23 -8.83 17.34 44.97 0.78 -8.05 14 16 C -0.22 -11.13 9.44 22.73 0.21 -10.92 14 17 H 0.29 13.78 8.30 -92.71 -0.77 13.01 14 18 H 0.10 5.77 6.15 -2.91 -0.02 5.75 14 19 H 0.12 4.70 8.06 -2.91 -0.02 4.67 14 20 H 0.12 4.44 8.06 -2.91 -0.02 4.42 14 21 H 0.10 2.78 8.09 -2.38 -0.02 2.76 14 22 H 0.09 2.69 8.08 -2.39 -0.02 2.67 14 23 H 0.10 4.70 8.06 -2.91 -0.02 4.67 14 Total: -1.00 -60.26 212.79 6.07 -54.19 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 1.20 Total: 14.60 kcal Atomic # 6 Polarization: -59.25 SS G_CDS: 1.82 Total: -57.43 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.24 Total: -43.78 kcal Atomic # 9 Polarization: -8.83 SS G_CDS: 0.78 Total: -8.05 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Total: -60.26 6.07 -54.19 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213656776.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.262 kcal (2) G-P(sol) polarization free energy of solvation -60.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds