Wall clock time and date at job start Mon Mar 30 2020 01:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86802 * 120.00357 * 2 1 4 4 H 1.48499 * 109.46905 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46945 * 120.00310 * 3 2 1 6 6 H 1.48497 * 109.46933 * 240.00266 * 3 2 1 7 7 C 1.39942 * 119.99571 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00207 * 154.60062 * 7 2 1 9 9 C 1.41401 * 120.00418 * 334.59747 * 7 2 1 10 10 C 1.40739 * 120.23840 * 334.52978 * 9 7 2 11 11 C 1.37593 * 119.74077 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.25264 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50051 * 0.02562 * 12 11 10 14 14 C 1.37643 * 120.24281 * 359.66907 * 13 12 11 15 15 C 1.50707 * 120.12639 * 180.31829 * 14 13 12 16 16 F 1.39901 * 109.47021 * 270.31142 * 15 14 13 17 17 H 0.97000 * 120.00769 * 174.17046 * 1 2 3 18 18 H 1.07996 * 120.12982 * 359.97438 * 10 9 7 19 19 H 1.08000 * 119.87342 * 180.02562 * 11 10 9 20 20 H 1.07996 * 119.75200 * 179.97438 * 12 11 10 21 21 H 1.07998 * 119.87807 * 179.97438 * 13 12 11 22 22 H 1.09001 * 109.46925 * 30.31073 * 15 14 13 23 23 H 1.08996 * 109.46849 * 150.30832 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 1.2774 2.7464 0.0006 5 1 3.0961 1.6962 1.2125 6 1 3.0960 1.6963 -1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0095 -1.2571 -0.4017 9 6 1.4034 -2.3776 0.5242 10 6 0.3900 -2.2746 1.4954 11 6 -0.1909 -3.4156 1.9994 12 6 0.2190 -4.6632 1.5545 13 6 1.2170 -4.7766 0.5992 14 6 1.8076 -3.6486 0.0764 15 6 2.8874 -3.7747 -0.9674 16 9 4.1349 -3.8591 -0.3399 17 1 -0.4851 -0.8356 -0.0853 18 1 0.0700 -1.3039 1.8442 19 1 -0.9690 -3.3391 2.7444 20 1 -0.2421 -5.5535 1.9560 21 1 1.5288 -5.7534 0.2601 22 1 2.7169 -4.6737 -1.5596 23 1 2.8667 -2.9011 -1.6188 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213656859.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:48 Heat of formation + Delta-G solvation = -67.626618 kcal Electronic energy + Delta-G solvation = -10332.693311 eV Core-core repulsion = 8251.393014 eV Total energy + Delta-G solvation = -2081.300297 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.065 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -48.42434 -39.65108 -35.82717 -32.89149 -31.20207 -27.65018 -26.46910 -22.92507 -21.91411 -19.72826 -17.20091 -16.96365 -16.64323 -16.37737 -15.69250 -15.29649 -14.77283 -14.22531 -13.90873 -13.17893 -12.89540 -12.69592 -12.25527 -12.03995 -11.91060 -11.39521 -11.16449 -10.89240 -9.64462 -9.55424 -9.17994 -6.52398 0.78035 0.90345 1.50134 1.63232 1.79496 2.30943 2.63883 3.44356 4.02405 4.09931 4.22323 4.38178 4.46909 4.77147 4.98859 4.99824 5.20895 5.40940 5.67806 5.76378 5.87217 5.96087 6.18306 6.34326 6.74175 6.89805 8.00506 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.040250 B = 0.017613 C = 0.013013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.487695 B = 1589.394338 C = 2151.258785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.006 3.994 3 Si 1.114 2.886 4 H -0.270 1.270 5 H -0.267 1.267 6 H -0.256 1.256 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.082 3.918 10 C -0.243 4.243 11 C -0.085 4.085 12 C -0.252 4.252 13 C -0.065 4.065 14 C -0.272 4.272 15 C 0.127 3.873 16 F -0.237 7.237 17 H 0.284 0.716 18 H 0.089 0.911 19 H 0.117 0.883 20 H 0.126 0.874 21 H 0.126 0.874 22 H 0.094 0.906 23 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.104 -2.458 -1.019 3.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.211 4.211 3 Si 0.931 3.069 4 H -0.194 1.194 5 H -0.192 1.192 6 H -0.180 1.180 7 C -0.578 4.578 8 H 0.092 0.908 9 C 0.080 3.920 10 C -0.262 4.262 11 C -0.103 4.103 12 C -0.271 4.271 13 C -0.083 4.083 14 C -0.274 4.274 15 C 0.073 3.927 16 F -0.219 7.219 17 H 0.097 0.903 18 H 0.108 0.892 19 H 0.135 0.865 20 H 0.144 0.856 21 H 0.144 0.856 22 H 0.112 0.888 23 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.868 -0.834 -0.963 2.261 hybrid contribution -0.016 -1.694 0.112 1.698 sum 1.852 -2.529 -0.851 3.248 Atomic orbital electron populations 1.70567 1.08902 1.33295 1.30782 1.28393 0.95666 1.07369 0.89661 0.83039 0.74812 0.69934 0.79098 1.19417 1.19229 1.18025 1.20750 1.03286 0.95144 1.38661 0.90841 1.17889 0.91043 0.93084 0.90012 1.21202 1.04751 0.97436 1.02861 1.21016 0.98134 0.92936 0.98199 1.20807 1.04185 0.96767 1.05373 1.20900 0.94965 0.97040 0.95394 1.20369 1.06501 0.93896 1.06637 1.20548 0.76308 1.03117 0.92718 1.92689 1.45631 1.97926 1.85615 0.90324 0.89249 0.86482 0.85581 0.85607 0.88805 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.72 12.32 21.83 0.27 -43.45 14 2 C 0.01 0.30 4.94 85.26 0.42 0.73 14 3 Si 1.11 43.33 30.00 68.60 2.06 45.39 14 4 H -0.27 -10.22 7.11 99.48 0.71 -9.52 14 5 H -0.27 -10.04 7.11 99.48 0.71 -9.33 14 6 H -0.26 -9.11 7.11 99.48 0.71 -8.40 14 7 C -0.55 -29.65 8.06 23.46 0.19 -29.46 14 8 H 0.07 3.90 6.94 -2.91 -0.02 3.88 14 9 C 0.08 4.43 5.30 -21.29 -0.11 4.32 14 10 C -0.24 -12.71 7.95 22.73 0.18 -12.53 14 11 C -0.08 -3.84 10.02 22.22 0.22 -3.62 14 12 C -0.25 -10.60 10.05 22.46 0.23 -10.37 14 13 C -0.06 -2.78 9.68 22.22 0.22 -2.57 14 14 C -0.27 -13.08 5.66 -19.40 -0.11 -13.19 14 15 C 0.13 5.31 7.07 71.24 0.50 5.81 14 16 F -0.24 -10.49 17.34 44.97 0.78 -9.71 14 17 H 0.28 15.90 6.68 -92.71 -0.62 15.28 14 18 H 0.09 4.88 6.49 -2.91 -0.02 4.86 14 19 H 0.12 4.59 8.06 -2.91 -0.02 4.56 14 20 H 0.13 4.39 8.06 -2.91 -0.02 4.36 14 21 H 0.13 4.46 8.06 -2.91 -0.02 4.43 14 22 H 0.09 3.16 8.09 -2.39 -0.02 3.14 14 23 H 0.07 3.00 6.78 -2.39 -0.02 2.98 14 Total: -1.00 -58.59 208.86 6.20 -52.39 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 1.36 Total: 16.26 kcal Atomic # 6 Polarization: -62.62 SS G_CDS: 1.74 Total: -60.88 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.27 Total: -43.45 kcal Atomic # 9 Polarization: -10.49 SS G_CDS: 0.78 Total: -9.71 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.06 Total: 45.39 kcal Total: -58.59 6.20 -52.39 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213656859.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.232 kcal (2) G-P(sol) polarization free energy of solvation -58.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds