Wall clock time and date at job start Mon Mar 30 2020 01:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47316 * 2 1 4 4 C 1.50702 * 109.47158 * 239.99367 * 2 1 3 5 5 C 1.39761 * 126.76842 * 59.69034 * 4 2 1 6 6 C 1.35667 * 107.34790 * 179.83321 * 5 4 2 7 7 O 1.34246 * 109.21528 * 0.43784 * 6 5 4 8 8 C 1.35090 * 109.38731 * 359.72192 * 7 6 5 9 9 C 1.39743 * 126.20406 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00292 * 174.07349 * 9 8 7 11 11 C 1.40157 * 120.00034 * 354.07093 * 9 8 7 12 12 N 1.30811 * 120.00283 * 6.01395 * 11 9 8 13 13 Si 1.86809 * 120.00092 * 186.01685 * 11 9 8 14 14 H 1.48492 * 109.46929 * 94.97957 * 13 11 9 15 15 H 1.48501 * 109.46970 * 214.98109 * 13 11 9 16 16 H 1.48503 * 109.46635 * 334.98050 * 13 11 9 17 17 H 1.09001 * 109.47352 * 180.02562 * 1 2 3 18 18 H 1.08997 * 109.47064 * 60.00532 * 1 2 3 19 19 H 1.09001 * 109.47297 * 300.00300 * 1 2 3 20 20 H 1.09010 * 109.46895 * 119.99755 * 2 1 3 21 21 H 1.08993 * 109.47330 * 59.99916 * 3 2 1 22 22 H 1.09003 * 109.47064 * 179.97438 * 3 2 1 23 23 H 1.08997 * 109.46619 * 299.99740 * 3 2 1 24 24 H 1.08002 * 126.32628 * 359.97438 * 5 4 2 25 25 H 1.07994 * 125.39390 * 180.12099 * 6 5 4 26 26 H 0.97000 * 119.99832 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7106 -1.2304 5 6 1.7785 -0.3622 -2.5599 6 6 2.4227 -1.2625 -3.3440 7 8 3.0538 -2.1552 -2.5650 8 6 2.8377 -1.8496 -1.2670 9 6 3.3316 -2.5472 -0.1614 10 1 3.1762 -2.1603 0.8348 11 6 4.0286 -3.7492 -0.3455 12 7 4.3195 -4.1583 -1.5534 13 14 4.5420 -4.7672 1.1343 14 1 3.5192 -5.8116 1.3955 15 1 5.8507 -5.4134 0.8605 16 1 4.6643 -3.8857 2.3231 17 1 -0.3634 -1.0277 0.0005 18 1 -0.3633 0.5137 -0.8900 19 1 -0.3634 0.5139 0.8900 20 1 1.8933 -0.5138 0.8901 21 1 1.6767 1.9563 0.8899 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9562 -0.8900 24 1 1.1818 0.4713 -2.9001 25 1 2.4231 -1.2642 -4.4240 26 1 4.8016 -4.9903 -1.6807 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213659688.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:25 Heat of formation + Delta-G solvation = -22.267007 kcal Electronic energy + Delta-G solvation = -10694.329397 eV Core-core repulsion = 8738.456345 eV Total energy + Delta-G solvation = -1955.873052 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.21351 -34.79128 -33.56432 -29.90855 -28.85243 -26.30649 -24.64613 -21.31491 -20.00996 -18.15822 -17.05075 -15.34446 -14.61750 -13.87644 -13.67534 -13.25834 -12.53838 -12.23212 -12.11730 -11.47912 -11.33079 -11.11167 -11.04250 -10.41440 -10.34512 -10.32863 -9.70363 -9.48571 -9.41727 -7.91756 -7.08182 -6.78726 -4.31195 2.92896 3.06352 3.11056 3.66424 3.91239 4.15676 5.15233 5.26115 5.85261 5.94983 6.18647 6.32597 6.51645 6.56842 6.60812 6.69815 6.72111 7.02515 7.11512 7.17328 7.35429 7.49274 7.88137 8.08149 8.31452 8.68830 8.82396 9.37710 10.21264 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.044305 B = 0.015405 C = 0.012374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.828661 B = 1817.192462 C = 2262.175144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.006 3.994 3 C -0.134 4.134 4 C -0.357 4.357 5 C -0.162 4.162 6 C -0.188 4.188 7 O -0.160 6.160 8 C 0.210 3.790 9 C -0.445 4.445 10 H 0.101 0.899 11 C 0.067 3.933 12 N -0.781 5.781 13 Si 0.919 3.081 14 H -0.268 1.268 15 H -0.276 1.276 16 H -0.260 1.260 17 H 0.048 0.952 18 H 0.043 0.957 19 H 0.035 0.965 20 H 0.061 0.939 21 H 0.035 0.965 22 H 0.048 0.952 23 H 0.043 0.957 24 H 0.106 0.894 25 H 0.159 0.841 26 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.107 2.723 2.749 4.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.013 4.013 3 C -0.191 4.191 4 C -0.359 4.359 5 C -0.181 4.181 6 C -0.254 4.254 7 O -0.057 6.057 8 C 0.157 3.843 9 C -0.475 4.475 10 H 0.119 0.881 11 C -0.152 4.152 12 N -0.408 5.408 13 Si 0.743 3.257 14 H -0.193 1.193 15 H -0.201 1.201 16 H -0.183 1.183 17 H 0.067 0.933 18 H 0.062 0.938 19 H 0.054 0.946 20 H 0.079 0.921 21 H 0.054 0.946 22 H 0.067 0.933 23 H 0.062 0.938 24 H 0.124 0.876 25 H 0.176 0.824 26 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.837 2.331 2.477 3.866 hybrid contribution 0.102 -0.318 0.365 0.495 sum -1.735 2.014 2.842 3.891 Atomic orbital electron populations 1.21795 0.97180 1.00745 0.99383 1.18924 0.93093 0.93525 0.95722 1.21800 1.00741 0.97191 0.99396 1.19749 1.17566 1.05544 0.93087 1.20788 1.03388 1.00169 0.93799 1.23126 1.09691 0.97330 0.95224 1.84428 1.59200 1.45808 1.16217 1.19455 0.91894 0.91263 0.81675 1.18679 1.31871 1.04496 0.92459 0.88082 1.26105 0.93925 0.97924 0.97289 1.69799 1.28466 1.20046 1.22440 0.86114 0.78478 0.79828 0.81297 1.19334 1.20094 1.18329 0.93267 0.93789 0.94584 0.92088 0.94581 0.93296 0.93775 0.87587 0.82354 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 9.09 37.16 0.34 -2.17 15 2 C 0.01 0.13 3.26 -91.77 -0.30 -0.17 15 3 C -0.13 -2.51 9.10 37.16 0.34 -2.17 15 4 C -0.36 -9.06 4.95 -103.56 -0.51 -9.57 15 5 C -0.16 -3.93 10.40 -39.93 -0.42 -4.35 15 6 C -0.19 -4.74 12.07 29.81 0.36 -4.38 15 7 O -0.16 -4.64 8.99 3.65 0.03 -4.61 15 8 C 0.21 5.95 6.79 -38.53 -0.26 5.69 15 9 C -0.44 -12.14 9.06 -38.30 -0.35 -12.48 15 10 H 0.10 2.59 6.87 -52.49 -0.36 2.23 15 11 C 0.07 1.75 5.49 -17.27 -0.09 1.65 15 12 N -0.78 -21.30 12.03 55.56 0.67 -20.63 15 13 Si 0.92 18.92 29.57 -169.99 -5.03 13.89 15 14 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 15 H -0.28 -5.54 7.11 56.52 0.40 -5.13 15 16 H -0.26 -5.20 7.11 56.52 0.40 -4.80 15 17 H 0.05 0.95 8.14 -51.93 -0.42 0.53 15 18 H 0.04 0.80 8.05 -51.93 -0.42 0.38 15 19 H 0.04 0.57 8.14 -51.93 -0.42 0.15 15 20 H 0.06 1.34 6.92 -51.92 -0.36 0.98 15 21 H 0.04 0.57 8.14 -51.93 -0.42 0.15 15 22 H 0.05 0.94 8.14 -51.93 -0.42 0.52 15 23 H 0.04 0.80 8.06 -51.93 -0.42 0.38 15 24 H 0.11 2.28 8.06 -52.49 -0.42 1.86 15 25 H 0.16 3.41 8.06 -52.49 -0.42 2.99 15 26 H 0.28 6.92 8.30 -40.82 -0.34 6.58 15 LS Contribution 229.00 15.07 3.45 3.45 Total: -1.00 -29.09 229.00 -5.00 -34.09 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -3.23 Total: 1.78 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: -0.89 Total: -27.96 kcal Atomic # 7 Polarization: -21.30 SS G_CDS: 0.67 Total: -20.63 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: 0.03 Total: -4.61 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -29.09 -5.00 -34.09 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213659688.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.819 kcal (2) G-P(sol) polarization free energy of solvation -29.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds