Wall clock time and date at job start Mon Mar 30 2020 01:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47316 * 2 1 4 4 C 1.50702 * 109.47158 * 239.99367 * 2 1 3 5 5 C 1.39761 * 126.76842 * 59.69034 * 4 2 1 6 6 C 1.35667 * 107.34790 * 179.83321 * 5 4 2 7 7 O 1.34246 * 109.21528 * 0.43784 * 6 5 4 8 8 C 1.35090 * 109.38731 * 359.72192 * 7 6 5 9 9 C 1.39743 * 126.20406 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00292 * 174.07349 * 9 8 7 11 11 C 1.40157 * 120.00034 * 354.07093 * 9 8 7 12 12 N 1.30811 * 120.00283 * 6.01395 * 11 9 8 13 13 Si 1.86809 * 120.00092 * 186.01685 * 11 9 8 14 14 H 1.48492 * 109.46929 * 94.97957 * 13 11 9 15 15 H 1.48501 * 109.46970 * 214.98109 * 13 11 9 16 16 H 1.48503 * 109.46635 * 334.98050 * 13 11 9 17 17 H 1.09001 * 109.47352 * 180.02562 * 1 2 3 18 18 H 1.08997 * 109.47064 * 60.00532 * 1 2 3 19 19 H 1.09001 * 109.47297 * 300.00300 * 1 2 3 20 20 H 1.09010 * 109.46895 * 119.99755 * 2 1 3 21 21 H 1.08993 * 109.47330 * 59.99916 * 3 2 1 22 22 H 1.09003 * 109.47064 * 179.97438 * 3 2 1 23 23 H 1.08997 * 109.46619 * 299.99740 * 3 2 1 24 24 H 1.08002 * 126.32628 * 359.97438 * 5 4 2 25 25 H 1.07994 * 125.39390 * 180.12099 * 6 5 4 26 26 H 0.97000 * 119.99832 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7106 -1.2304 5 6 1.7785 -0.3622 -2.5599 6 6 2.4227 -1.2625 -3.3440 7 8 3.0538 -2.1552 -2.5650 8 6 2.8377 -1.8496 -1.2670 9 6 3.3316 -2.5472 -0.1614 10 1 3.1762 -2.1603 0.8348 11 6 4.0286 -3.7492 -0.3455 12 7 4.3195 -4.1583 -1.5534 13 14 4.5420 -4.7672 1.1343 14 1 3.5192 -5.8116 1.3955 15 1 5.8507 -5.4134 0.8605 16 1 4.6643 -3.8857 2.3231 17 1 -0.3634 -1.0277 0.0005 18 1 -0.3633 0.5137 -0.8900 19 1 -0.3634 0.5139 0.8900 20 1 1.8933 -0.5138 0.8901 21 1 1.6767 1.9563 0.8899 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9562 -0.8900 24 1 1.1818 0.4713 -2.9001 25 1 2.4231 -1.2642 -4.4240 26 1 4.8016 -4.9903 -1.6807 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213659688.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:25 Heat of formation + Delta-G solvation = -39.188866 kcal Electronic energy + Delta-G solvation = -10695.063184 eV Core-core repulsion = 8738.456345 eV Total energy + Delta-G solvation = -1956.606838 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.23600 -36.51225 -35.52584 -31.81889 -30.85125 -27.79113 -26.61422 -23.09818 -21.98091 -20.04463 -19.02925 -17.26592 -16.39681 -15.95469 -15.40869 -14.99728 -14.23363 -13.91002 -13.77289 -13.11403 -12.94552 -12.89374 -12.84814 -12.30695 -11.97969 -11.90158 -11.44199 -11.30437 -11.22680 -9.87124 -9.11996 -8.71515 -6.33388 1.22267 1.37620 1.54386 1.75117 2.18768 2.24021 3.18859 3.26762 4.23555 4.39152 4.61251 4.73478 4.82991 4.93336 4.97538 5.09929 5.11760 5.21540 5.36257 5.50774 5.63198 5.64410 5.97547 6.07471 6.37622 6.71215 6.82756 7.34811 8.31609 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.044305 B = 0.015405 C = 0.012374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.828661 B = 1817.192462 C = 2262.175144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.002 4.002 3 C -0.126 4.126 4 C -0.360 4.360 5 C -0.162 4.162 6 C -0.208 4.208 7 O -0.192 6.192 8 C 0.161 3.839 9 C -0.476 4.476 10 H 0.107 0.893 11 C 0.019 3.981 12 N -0.824 5.824 13 Si 1.000 3.000 14 H -0.261 1.261 15 H -0.266 1.266 16 H -0.250 1.250 17 H 0.033 0.967 18 H 0.050 0.950 19 H 0.068 0.932 20 H 0.048 0.952 21 H 0.068 0.932 22 H 0.033 0.967 23 H 0.050 0.950 24 H 0.137 0.863 25 H 0.189 0.811 26 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.687 3.381 3.912 5.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.021 4.021 3 C -0.184 4.184 4 C -0.362 4.362 5 C -0.181 4.181 6 C -0.273 4.273 7 O -0.089 6.089 8 C 0.109 3.891 9 C -0.505 4.505 10 H 0.125 0.875 11 C -0.196 4.196 12 N -0.452 5.452 13 Si 0.819 3.181 14 H -0.185 1.185 15 H -0.191 1.191 16 H -0.173 1.173 17 H 0.052 0.948 18 H 0.069 0.931 19 H 0.087 0.913 20 H 0.067 0.933 21 H 0.087 0.913 22 H 0.052 0.948 23 H 0.069 0.931 24 H 0.155 0.845 25 H 0.206 0.794 26 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.428 3.010 3.631 5.305 hybrid contribution 0.237 -0.443 -0.080 0.509 sum -2.191 2.567 3.552 4.899 Atomic orbital electron populations 1.21703 0.94902 1.00415 1.01320 1.19080 0.95012 0.94627 0.93341 1.21707 0.99785 0.95536 1.01327 1.20363 1.16131 1.04579 0.95164 1.21135 1.03134 1.00630 0.93231 1.23893 1.09601 0.97139 0.96692 1.84375 1.60246 1.47262 1.17054 1.20113 0.93941 0.93210 0.81879 1.19049 1.33071 1.05764 0.92642 0.87480 1.27156 0.93210 0.98627 1.00642 1.69884 1.29376 1.20952 1.24950 0.84923 0.78347 0.77856 0.77013 1.18520 1.19065 1.17278 0.94770 0.93138 0.91323 0.93336 0.91329 0.94779 0.93127 0.84512 0.79382 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 9.09 71.98 0.65 -3.77 15 2 C 0.00 -0.08 3.26 -11.54 -0.04 -0.12 15 3 C -0.13 -4.42 9.10 71.98 0.65 -3.77 15 4 C -0.36 -18.22 4.95 -19.18 -0.09 -18.32 15 5 C -0.16 -7.72 10.40 22.04 0.23 -7.49 15 6 C -0.21 -10.53 12.07 67.22 0.81 -9.72 15 7 O -0.19 -11.43 8.99 -9.85 -0.09 -11.52 15 8 C 0.16 9.33 6.79 22.95 0.16 9.48 15 9 C -0.48 -26.54 9.06 23.10 0.21 -26.33 15 10 H 0.11 5.59 6.87 -2.91 -0.02 5.57 15 11 C 0.02 1.00 5.49 85.31 0.47 1.47 15 12 N -0.82 -46.04 12.03 21.87 0.26 -45.77 15 13 Si 1.00 38.72 29.57 68.60 2.03 40.75 15 14 H -0.26 -9.70 7.11 99.48 0.71 -9.00 15 15 H -0.27 -9.79 7.11 99.48 0.71 -9.09 15 16 H -0.25 -9.15 7.11 99.48 0.71 -8.45 15 17 H 0.03 1.27 8.14 -2.39 -0.02 1.25 15 18 H 0.05 1.69 8.05 -2.39 -0.02 1.67 15 19 H 0.07 1.95 8.14 -2.39 -0.02 1.93 15 20 H 0.05 2.10 6.92 -2.38 -0.02 2.08 15 21 H 0.07 1.95 8.14 -2.39 -0.02 1.93 15 22 H 0.03 1.26 8.14 -2.39 -0.02 1.24 15 23 H 0.05 1.69 8.06 -2.39 -0.02 1.67 15 24 H 0.14 5.54 8.06 -2.91 -0.02 5.51 15 25 H 0.19 7.96 8.06 -2.91 -0.02 7.94 15 26 H 0.29 14.49 8.30 -92.71 -0.77 13.72 15 Total: -1.00 -63.52 229.00 6.41 -57.12 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 1.15 Total: 17.98 kcal Atomic # 6 Polarization: -61.61 SS G_CDS: 3.05 Total: -58.56 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.26 Total: -45.77 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -0.09 Total: -11.52 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Total: -63.52 6.41 -57.12 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213659688.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.929 kcal (2) G-P(sol) polarization free energy of solvation -63.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds