Wall clock time and date at job start Mon Mar 30 2020 02:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33026 * 126.26743 * 2 1 4 4 C 1.31006 * 109.98202 * 180.02562 * 3 2 1 5 5 C 1.50702 * 125.17888 * 179.97438 * 4 3 2 6 6 N 1.35075 * 109.64769 * 359.97438 * 4 3 2 7 7 C 1.46500 * 126.48956 * 179.97438 * 6 4 3 8 8 C 1.38438 * 107.02893 * 0.02562 * 6 4 3 9 9 C 1.40066 * 127.05989 * 179.97438 * 8 6 4 10 10 H 1.08002 * 119.99987 * 145.65860 * 9 8 6 11 11 C 1.40075 * 119.99926 * 325.66200 * 9 8 6 12 12 N 1.30853 * 119.99623 * 338.75987 * 11 9 8 13 13 Si 1.86795 * 119.99910 * 158.76446 * 11 9 8 14 14 H 1.48496 * 109.47269 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47491 * 119.99721 * 13 11 9 16 16 H 1.48500 * 109.46942 * 239.99948 * 13 11 9 17 17 H 1.09000 * 109.46721 * 95.17994 * 1 2 3 18 18 H 1.09007 * 109.46881 * 215.17056 * 1 2 3 19 19 H 1.08990 * 109.47549 * 335.17448 * 1 2 3 20 20 H 1.09003 * 109.46898 * 90.01912 * 5 4 3 21 21 H 1.08991 * 109.47043 * 210.01947 * 5 4 3 22 22 H 1.08995 * 109.46722 * 330.02352 * 5 4 3 23 23 H 1.09002 * 109.47102 * 270.05044 * 7 6 4 24 24 H 1.09002 * 109.46552 * 30.04270 * 7 6 4 25 25 H 1.08996 * 109.47449 * 150.04678 * 7 6 4 26 26 H 0.97011 * 119.99411 * 177.98416 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2939 1.0725 0.0000 4 6 3.5514 0.7052 -0.0006 5 6 4.7303 1.6441 -0.0013 6 7 3.6307 -0.6433 -0.0004 7 6 4.8575 -1.4439 -0.0014 8 6 2.3330 -1.1256 -0.0002 9 6 1.9313 -2.4674 -0.0005 10 1 1.0366 -2.7634 0.5272 11 6 2.6898 -3.4255 -0.6852 12 7 3.5023 -3.0551 -1.6418 13 14 2.5415 -5.2317 -0.2329 14 1 1.5630 -5.3862 0.8734 15 1 2.0783 -6.0018 -1.4151 16 1 3.8657 -5.7431 0.2032 17 1 -0.3633 -0.0928 -1.0235 18 1 -0.3633 -0.8401 0.5920 19 1 -0.3634 0.9326 0.4314 20 1 5.0151 1.8703 1.0262 21 1 5.5685 1.1743 -0.5157 22 1 4.4596 2.5666 -0.5148 23 1 5.1613 -1.6419 -1.0293 24 1 5.6484 -0.8973 0.5123 25 1 4.6757 -2.3880 0.5121 26 1 4.0493 -3.7150 -2.0962 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218579033.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:51 Heat of formation + Delta-G solvation = 35.204851 kcal Electronic energy + Delta-G solvation = -10872.268135 eV Core-core repulsion = 8951.180001 eV Total energy + Delta-G solvation = -1921.088134 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.02212 -33.86831 -32.57824 -30.61941 -28.12474 -27.51692 -25.02404 -22.61907 -19.15361 -18.36807 -16.80513 -15.12988 -14.54718 -14.29283 -13.12782 -12.88476 -12.36742 -12.14771 -11.97605 -11.64931 -11.43633 -11.21605 -11.03286 -10.76662 -10.75248 -10.56518 -10.26413 -9.11164 -8.33460 -7.83796 -6.88923 -6.57040 -4.27017 2.91646 3.08002 3.14443 3.70518 3.96533 4.41744 4.52056 5.12333 5.79347 5.89258 6.09706 6.28847 6.39346 6.48981 6.57203 6.72333 6.78042 6.90969 7.03804 7.19521 7.44863 7.88887 7.94549 8.50293 8.72899 8.85722 9.17393 9.86719 10.23697 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.046904 B = 0.017388 C = 0.013490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.818702 B = 1609.880822 C = 2075.069897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 C -0.146 4.146 3 N -0.476 5.476 4 C 0.085 3.915 5 C -0.041 4.041 6 N -0.459 5.459 7 C 0.111 3.889 8 C 0.211 3.789 9 C -0.460 4.460 10 H 0.091 0.909 11 C 0.074 3.926 12 N -0.815 5.815 13 Si 0.902 3.098 14 H -0.261 1.261 15 H -0.276 1.276 16 H -0.275 1.275 17 H 0.039 0.961 18 H 0.048 0.952 19 H 0.040 0.960 20 H 0.052 0.948 21 H 0.053 0.947 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.045 0.955 25 H 0.065 0.935 26 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.002 -0.734 1.978 3.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.275 4.275 3 N -0.196 5.196 4 C -0.170 4.170 5 C -0.100 4.100 6 N -0.147 5.147 7 C -0.033 4.033 8 C 0.096 3.904 9 C -0.496 4.496 10 H 0.109 0.891 11 C -0.141 4.141 12 N -0.445 5.445 13 Si 0.727 3.273 14 H -0.184 1.184 15 H -0.201 1.201 16 H -0.200 1.200 17 H 0.058 0.942 18 H 0.067 0.933 19 H 0.059 0.941 20 H 0.071 0.929 21 H 0.072 0.928 22 H 0.086 0.914 23 H 0.091 0.909 24 H 0.064 0.936 25 H 0.084 0.916 26 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.006 -0.005 1.802 3.504 hybrid contribution 0.477 -1.873 -0.006 1.933 sum 3.483 -1.877 1.796 4.345 Atomic orbital electron populations 1.19434 0.89921 0.99363 0.99476 1.20682 0.94514 0.88227 1.24108 1.69135 0.99935 1.32100 1.18477 1.22072 0.94022 0.82133 1.18723 1.19724 0.92710 0.96803 1.00718 1.44930 1.06458 1.05688 1.57638 1.21599 0.84462 0.94853 1.02399 1.18528 0.81088 0.93968 0.96767 1.18450 1.10695 0.89707 1.30715 0.89128 1.25782 0.94270 1.01093 0.92948 1.69935 1.21577 1.36638 1.16328 0.86358 0.79031 0.82398 0.79544 1.18440 1.20132 1.20023 0.94236 0.93273 0.94102 0.92894 0.92840 0.91434 0.90893 0.93637 0.91580 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.55 10.23 36.01 0.37 -0.18 15 2 C -0.15 -4.00 7.25 -81.56 -0.59 -4.59 15 3 N -0.48 -12.96 11.18 -6.06 -0.07 -13.03 15 4 C 0.09 2.13 7.87 -154.96 -1.22 0.91 15 5 C -0.04 -0.78 9.96 36.01 0.36 -0.42 15 6 N -0.46 -11.84 3.14 -118.32 -0.37 -12.21 15 7 C 0.11 2.43 8.79 59.85 0.53 2.95 15 8 C 0.21 5.88 6.21 -83.68 -0.52 5.37 15 9 C -0.46 -12.34 8.90 -38.21 -0.34 -12.68 15 10 H 0.09 2.36 7.86 -52.49 -0.41 1.95 15 11 C 0.07 1.85 4.11 -17.28 -0.07 1.78 15 12 N -0.82 -20.80 10.38 55.56 0.58 -20.22 15 13 Si 0.90 18.59 29.61 -169.99 -5.03 13.56 15 14 H -0.26 -5.36 7.11 56.52 0.40 -4.96 15 15 H -0.28 -5.67 7.11 56.52 0.40 -5.27 15 16 H -0.27 -5.51 7.11 56.52 0.40 -5.11 15 17 H 0.04 0.87 8.14 -51.93 -0.42 0.45 15 18 H 0.05 1.06 8.03 -51.92 -0.42 0.64 15 19 H 0.04 0.86 8.14 -51.93 -0.42 0.44 15 20 H 0.05 0.90 8.14 -51.93 -0.42 0.48 15 21 H 0.05 0.91 7.66 -51.93 -0.40 0.52 15 22 H 0.07 1.21 8.14 -51.93 -0.42 0.79 15 23 H 0.07 1.63 6.98 -51.93 -0.36 1.27 15 24 H 0.04 0.83 7.63 -51.93 -0.40 0.44 15 25 H 0.07 1.47 6.98 -51.93 -0.36 1.11 15 26 H 0.28 6.43 8.30 -40.82 -0.34 6.09 15 LS Contribution 224.93 15.07 3.39 3.39 Total: -1.00 -30.37 224.93 -6.17 -36.54 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -3.17 Total: -1.17 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -1.49 Total: -6.86 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.14 Total: -45.46 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -30.37 -6.17 -36.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218579033.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.746 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds