Wall clock time and date at job start Mon Mar 30 2020 01:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31025 * 1 3 3 Si 1.86799 * 119.99939 * 2 1 4 4 H 1.48499 * 109.47207 * 271.42085 * 3 2 1 5 5 H 1.48504 * 109.47080 * 31.41854 * 3 2 1 6 6 H 1.48509 * 109.47374 * 151.41762 * 3 2 1 7 7 C 1.39701 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99765 * 344.08808 * 7 2 1 9 9 C 1.41600 * 119.99882 * 164.08241 * 7 2 1 10 10 C 1.41878 * 126.55843 * 341.51033 * 9 7 2 11 11 N 1.30320 * 108.04523 * 179.75477 * 10 9 7 12 12 N 1.39878 * 109.22990 * 0.43647 * 11 10 9 13 13 C 1.46504 * 125.67354 * 179.80768 * 12 11 10 14 14 C 1.50695 * 109.47339 * 304.69905 * 13 12 11 15 15 O 1.20764 * 119.99775 * 125.00098 * 14 13 12 16 16 C 1.34495 * 108.64785 * 359.55286 * 12 11 10 17 17 H 0.96995 * 119.99850 * 359.97438 * 1 2 3 18 18 H 1.07999 * 125.97820 * 359.97438 * 10 9 7 19 19 H 1.08998 * 109.46585 * 184.69553 * 13 12 11 20 20 H 1.08999 * 109.46528 * 64.69918 * 13 12 11 21 21 H 1.07998 * 119.99969 * 304.99834 * 14 13 12 22 22 H 1.08005 * 126.40885 * 180.22901 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 2.4617 2.0638 -1.3996 5 1 1.4570 2.6438 0.7299 6 1 3.5565 1.4318 0.6699 7 6 2.0088 -1.2098 0.0005 8 1 1.4998 -2.1271 0.2574 9 6 3.3841 -1.2334 -0.3358 10 6 4.1010 -0.2268 -1.0327 11 7 5.3401 -0.6156 -1.1414 12 7 5.4832 -1.8714 -0.5422 13 6 6.7257 -2.6435 -0.4627 14 6 7.2878 -2.8349 -1.8477 15 8 8.4199 -2.4932 -2.0924 16 6 4.2916 -2.2495 -0.0462 17 1 -0.4850 0.8400 0.0004 18 1 3.6923 0.7011 -1.4046 19 1 6.5208 -3.6164 -0.0160 20 1 7.4484 -2.1065 0.1518 21 1 6.6781 -3.2776 -2.6214 22 1 4.0781 -3.1693 0.4780 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221577688.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:42 Heat of formation + Delta-G solvation = 22.102909 kcal Electronic energy + Delta-G solvation = -10127.255682 eV Core-core repulsion = 8069.766311 eV Total energy + Delta-G solvation = -2057.489371 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.57754 -40.06585 -35.51551 -34.05740 -31.39685 -29.41806 -26.14207 -23.41645 -21.81845 -21.24707 -19.25689 -17.51609 -17.27233 -16.65112 -16.47636 -15.46045 -15.05581 -14.89873 -14.52490 -13.56455 -13.45880 -12.94164 -12.67383 -12.58889 -11.74877 -11.22885 -11.05393 -10.99911 -9.97762 -9.36906 -8.62008 -6.11710 0.69169 1.06078 1.28128 1.45278 1.50453 1.98487 2.05354 2.22678 3.20745 3.34580 3.92603 4.03800 4.27417 4.42288 4.64715 5.01777 5.27188 5.42709 5.75945 6.18577 6.37148 6.50270 6.80664 6.96320 7.17413 8.50116 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.085529 B = 0.011600 C = 0.010639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.295747 B = 2413.279704 C = 2631.260897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.040 3.960 3 Si 0.954 3.046 4 H -0.259 1.259 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.464 4.464 8 H 0.057 0.943 9 C -0.068 4.068 10 C -0.038 4.038 11 N -0.329 5.329 12 N -0.366 5.366 13 C 0.073 3.927 14 C 0.359 3.641 15 O -0.490 6.490 16 C -0.064 4.064 17 H 0.283 0.717 18 H 0.160 0.840 19 H 0.168 0.832 20 H 0.096 0.904 21 H 0.126 0.874 22 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.093 -4.377 -0.335 10.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.169 4.169 3 Si 0.780 3.220 4 H -0.185 1.185 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.498 4.498 8 H 0.075 0.925 9 C -0.078 4.078 10 C -0.222 4.222 11 N -0.154 5.154 12 N -0.156 5.156 13 C -0.049 4.049 14 C 0.215 3.785 15 O -0.361 6.361 16 C -0.207 4.207 17 H 0.093 0.907 18 H 0.177 0.823 19 H 0.185 0.815 20 H 0.114 0.886 21 H 0.142 0.858 22 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 10.723 -3.886 -0.875 11.439 hybrid contribution -1.125 0.564 0.403 1.321 sum 9.598 -3.322 -0.473 10.167 Atomic orbital electron populations 1.69791 1.08618 1.30085 1.43085 1.26400 0.95207 1.03231 0.92052 0.85786 0.78996 0.78046 0.79174 1.18548 1.21018 1.18483 1.18539 0.92136 0.94935 1.44203 0.92499 1.18443 0.94467 0.94233 1.00703 1.23877 0.92286 1.01604 1.04414 1.76484 1.19710 0.97519 1.21684 1.47598 1.07976 1.13600 1.46444 1.22665 0.84239 0.99058 0.98939 1.26580 0.87242 0.72059 0.92616 1.90399 1.22851 1.39620 1.83189 1.22902 0.84179 1.03782 1.09831 0.90694 0.82329 0.81498 0.88554 0.85796 0.79104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.13 13.94 21.79 0.30 -49.83 14 2 C 0.04 2.17 5.50 85.17 0.47 2.64 14 3 Si 0.95 43.41 24.51 68.60 1.68 45.09 14 4 H -0.26 -11.13 6.68 99.48 0.66 -10.46 14 5 H -0.28 -12.34 7.11 99.48 0.71 -11.64 14 6 H -0.26 -12.08 6.54 99.48 0.65 -11.43 14 7 C -0.46 -25.63 9.91 23.45 0.23 -25.40 14 8 H 0.06 3.33 8.06 -2.91 -0.02 3.30 14 9 C -0.07 -3.35 5.49 -21.30 -0.12 -3.47 14 10 C -0.04 -1.82 9.27 85.82 0.80 -1.02 14 11 N -0.33 -14.47 12.29 -55.94 -0.69 -15.16 14 12 N -0.37 -13.24 3.64 -348.75 -1.27 -14.51 14 13 C 0.07 1.72 7.06 85.63 0.60 2.32 14 14 C 0.36 8.66 11.36 71.23 0.81 9.47 14 15 O -0.49 -15.23 17.90 -1.46 -0.03 -15.25 14 16 C -0.06 -2.53 11.50 84.54 0.97 -1.56 14 17 H 0.28 14.68 8.30 -92.71 -0.77 13.91 14 18 H 0.16 7.42 4.23 -2.91 -0.01 7.41 14 19 H 0.17 2.35 8.06 -2.39 -0.02 2.33 14 20 H 0.10 2.30 8.12 -2.39 -0.02 2.28 14 21 H 0.13 2.40 8.06 -2.91 -0.02 2.38 14 22 H 0.19 6.08 8.06 -2.91 -0.02 6.05 14 Total: -1.00 -67.44 205.58 4.90 -62.54 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: 1.13 Total: 4.14 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: 3.77 Total: -17.02 kcal Atomic # 7 Polarization: -77.84 SS G_CDS: -1.65 Total: -79.50 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.03 Total: -15.25 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.68 Total: 45.09 kcal Total: -67.44 4.90 -62.54 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221577688.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.643 kcal (2) G-P(sol) polarization free energy of solvation -67.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds