Wall clock time and date at job start Mon Mar 30 2020 02:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.46821 * 2 1 4 4 N 1.46498 * 109.47108 * 120.00009 * 2 1 3 5 5 C 1.36415 * 126.55874 * 300.28375 * 4 2 1 6 6 C 1.36218 * 107.19405 * 180.14280 * 5 4 2 7 7 N 1.32759 * 108.61903 * 359.61258 * 6 5 4 8 8 C 1.32978 * 109.22662 * 0.24342 * 7 6 5 9 9 C 1.39992 * 125.96785 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00422 * 180.02562 * 9 8 7 11 11 C 1.40240 * 119.99953 * 0.02924 * 9 8 7 12 12 N 1.30686 * 119.99714 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00226 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47199 * 59.99588 * 13 11 9 15 15 H 1.48492 * 109.47074 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47023 * 299.99790 * 13 11 9 17 17 H 1.09005 * 109.46871 * 299.99500 * 1 2 3 18 18 H 1.08995 * 109.47364 * 59.99704 * 1 2 3 19 19 H 1.08996 * 109.46601 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47023 * 240.00226 * 2 1 3 21 21 H 1.09003 * 109.46852 * 179.97438 * 3 2 1 22 22 H 1.08995 * 109.47393 * 300.00278 * 3 2 1 23 23 H 1.09005 * 109.46532 * 60.00299 * 3 2 1 24 24 H 1.07993 * 126.40508 * 0.02562 * 5 4 2 25 25 H 1.08002 * 125.69369 * 179.88270 * 6 5 4 26 26 H 0.97005 * 119.99800 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7683 -0.3463 2.4922 6 6 2.4140 -1.2500 3.2808 7 7 3.0341 -2.1269 2.5002 8 6 2.8124 -1.8134 1.2271 9 6 3.3020 -2.5049 0.1128 10 1 3.0613 -2.1638 -0.8832 11 6 4.1052 -3.6409 0.2897 12 7 4.3969 -4.0535 1.4950 13 14 4.7580 -4.5642 -1.1971 14 1 5.5993 -3.6538 -2.0150 15 1 5.5748 -5.7183 -0.7437 16 1 3.6193 -5.0539 -2.0148 17 1 -0.3633 0.5138 0.8901 18 1 -0.3634 0.5138 -0.8899 19 1 -0.3632 -1.0277 -0.0005 20 1 1.8934 -0.5138 -0.8900 21 1 3.1300 1.4426 0.0005 22 1 1.6767 1.9564 -0.8899 23 1 1.6766 1.9563 0.8901 24 1 1.1716 0.4880 2.8300 25 1 2.4172 -1.2552 4.3608 26 1 4.9528 -4.8390 1.6174 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223127286.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:35 Heat of formation + Delta-G solvation = 47.659478 kcal Electronic energy + Delta-G solvation = -10751.113606 eV Core-core repulsion = 8830.565546 eV Total energy + Delta-G solvation = -1920.548061 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.85374 -34.83959 -33.20688 -29.21864 -28.50771 -26.82182 -24.81646 -21.66199 -19.82694 -18.49546 -16.77068 -15.52566 -14.57216 -13.92106 -13.76913 -12.88093 -12.62740 -12.27264 -12.15345 -11.80672 -11.41546 -11.11514 -11.07909 -10.78008 -10.53552 -10.32651 -9.98145 -9.12869 -7.85393 -7.66601 -6.95504 -6.31145 -4.18340 3.11060 3.19289 3.20655 3.76362 4.07028 4.40581 4.81700 5.28454 5.50148 5.69507 5.82148 5.89025 6.00464 6.11179 6.24184 6.47591 6.49172 6.63786 6.67976 7.22577 7.39083 7.72669 8.21006 8.32890 8.68576 9.06141 9.43970 10.35774 10.62555 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.046130 B = 0.015497 C = 0.012567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.836375 B = 1806.382407 C = 2227.454237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.142 3.858 3 C -0.155 4.155 4 N -0.500 5.500 5 C -0.171 4.171 6 C -0.021 4.021 7 N -0.518 5.518 8 C 0.374 3.626 9 C -0.466 4.466 10 H 0.075 0.925 11 C 0.082 3.918 12 N -0.745 5.745 13 Si 0.908 3.092 14 H -0.268 1.268 15 H -0.279 1.279 16 H -0.268 1.268 17 H 0.054 0.946 18 H 0.058 0.942 19 H 0.058 0.942 20 H 0.091 0.909 21 H 0.058 0.942 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.131 0.869 25 H 0.131 0.869 26 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.762 5.312 -4.444 7.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.037 3.963 3 C -0.213 4.213 4 N -0.191 5.191 5 C -0.301 4.301 6 C -0.174 4.174 7 N -0.239 5.239 8 C 0.131 3.869 9 C -0.505 4.505 10 H 0.093 0.907 11 C -0.141 4.141 12 N -0.370 5.370 13 Si 0.733 3.267 14 H -0.193 1.193 15 H -0.204 1.204 16 H -0.193 1.193 17 H 0.073 0.927 18 H 0.077 0.923 19 H 0.077 0.923 20 H 0.110 0.890 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.148 0.852 25 H 0.149 0.851 26 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.250 4.591 -4.078 6.948 hybrid contribution -0.289 0.405 -0.826 0.964 sum -3.540 4.996 -4.903 7.844 Atomic orbital electron populations 1.22112 0.95594 1.02275 1.01327 1.20878 0.93606 0.92774 0.89031 1.22111 1.01851 0.96015 1.01323 1.45513 1.43936 1.25542 1.04076 1.21695 1.16293 1.07443 0.84673 1.22114 1.01431 0.95848 0.98016 1.71272 1.27254 1.26421 0.99000 1.20276 0.89642 0.83594 0.93425 1.18027 1.31062 1.10546 0.90901 0.90701 1.25673 0.95203 0.96772 0.96434 1.70013 1.26024 1.19392 1.21601 0.86404 0.79293 0.79163 0.81844 1.19314 1.20397 1.19310 0.92660 0.92283 0.92258 0.89048 0.92257 0.92278 0.92668 0.85180 0.85122 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.25 37.16 0.34 -2.17 15 2 C 0.14 2.73 3.55 -67.92 -0.24 2.49 15 3 C -0.15 -2.51 9.26 37.16 0.34 -2.17 15 4 N -0.50 -12.18 2.66 -108.88 -0.29 -12.47 15 5 C -0.17 -4.07 10.64 -16.24 -0.17 -4.24 15 6 C -0.02 -0.56 11.85 -17.88 -0.21 -0.78 15 7 N -0.52 -15.63 9.40 -12.72 -0.12 -15.75 15 8 C 0.37 10.74 7.43 -155.60 -1.16 9.58 15 9 C -0.47 -13.01 9.03 -38.17 -0.34 -13.35 15 10 H 0.07 1.92 6.71 -52.49 -0.35 1.57 15 11 C 0.08 2.23 5.50 -17.29 -0.10 2.13 15 12 N -0.75 -21.47 11.90 55.56 0.66 -20.81 15 13 Si 0.91 19.60 29.56 -169.99 -5.03 14.57 15 14 H -0.27 -5.66 7.11 56.52 0.40 -5.25 15 15 H -0.28 -5.89 7.11 56.52 0.40 -5.48 15 16 H -0.27 -5.66 7.11 56.52 0.40 -5.25 15 17 H 0.05 0.88 7.95 -51.93 -0.41 0.46 15 18 H 0.06 0.77 8.14 -51.93 -0.42 0.34 15 19 H 0.06 1.04 8.14 -51.93 -0.42 0.61 15 20 H 0.09 1.78 6.69 -51.93 -0.35 1.44 15 21 H 0.06 1.04 8.14 -51.93 -0.42 0.61 15 22 H 0.06 0.77 8.14 -51.93 -0.42 0.34 15 23 H 0.05 0.87 7.96 -51.93 -0.41 0.46 15 24 H 0.13 2.66 8.06 -52.49 -0.42 2.24 15 25 H 0.13 3.04 8.06 -52.49 -0.42 2.61 15 26 H 0.27 7.11 8.29 -40.82 -0.34 6.77 15 LS Contribution 227.63 15.07 3.43 3.43 Total: -1.00 -31.97 227.63 -6.07 -38.04 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -3.20 Total: 1.47 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -1.53 Total: -8.50 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.25 Total: -49.02 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.57 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -31.97 -6.07 -38.04 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223127286.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.701 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds