Wall clock time and date at job start Mon Mar 30 2020 02:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40084 * 126.03058 * 2 1 4 4 C 1.30842 * 108.20250 * 179.73948 * 3 2 1 5 5 C 1.39868 * 108.20327 * 0.44521 * 4 3 2 6 6 C 1.34941 * 126.04014 * 180.02562 * 2 1 3 7 7 C 1.50696 * 126.13067 * 359.97438 * 6 2 1 8 8 C 1.53005 * 109.47260 * 265.00771 * 7 6 2 9 9 C 1.50696 * 109.47260 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99757 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00131 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99709 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 119.99925 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47351 * 89.99850 * 13 11 9 15 15 H 1.48505 * 109.46996 * 209.99836 * 13 11 9 16 16 H 1.48501 * 109.47165 * 329.99640 * 13 11 9 17 17 H 1.08994 * 109.47427 * 269.96961 * 1 2 3 18 18 H 1.08999 * 109.47247 * 29.97548 * 1 2 3 19 19 H 1.09007 * 109.46720 * 149.97509 * 1 2 3 20 20 H 1.08007 * 125.90122 * 180.26287 * 4 3 2 21 21 H 1.08002 * 126.04477 * 179.82088 * 5 4 3 22 22 H 1.09002 * 109.46733 * 25.00405 * 7 6 2 23 23 H 1.08998 * 109.47609 * 145.00695 * 7 6 2 24 24 H 1.09002 * 109.46948 * 299.99502 * 8 7 6 25 25 H 1.08995 * 109.47549 * 59.99195 * 8 7 6 26 26 H 0.97008 * 119.99727 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1329 0.0000 4 6 3.5346 0.7323 0.0057 5 6 3.5438 -0.6663 -0.0009 6 6 2.2589 -1.0911 -0.0005 7 6 1.7975 -2.5257 -0.0006 8 6 1.7614 -3.0500 1.4364 9 6 1.2994 -4.4844 1.4363 10 1 1.0555 -4.9731 0.5046 11 6 1.1880 -5.1729 2.6258 12 7 1.4855 -4.5779 3.7602 13 14 0.6146 -6.9506 2.6257 14 1 1.7899 -7.8498 2.5021 15 1 -0.0991 -7.2405 3.8953 16 1 -0.3028 -7.1748 1.4797 17 1 -0.3634 -0.0005 1.0276 18 1 -0.3634 0.8902 -0.5134 19 1 -0.3633 -0.8898 -0.5143 20 1 4.4053 1.3713 0.0112 21 1 4.4212 -1.2961 -0.0013 22 1 0.7995 -2.5863 -0.4346 23 1 2.4874 -3.1293 -0.5903 24 1 2.7594 -2.9894 1.8704 25 1 1.0715 -2.4464 2.0262 26 1 1.4075 -5.0624 4.5970 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230881296.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:43 Heat of formation + Delta-G solvation = 39.545492 kcal Electronic energy + Delta-G solvation = -10324.746593 eV Core-core repulsion = 8403.846684 eV Total energy + Delta-G solvation = -1920.899909 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.06892 -36.04459 -34.25025 -33.47861 -30.27147 -27.56600 -26.90182 -23.41609 -21.97709 -20.48101 -18.60178 -17.34943 -16.60995 -16.19006 -15.44881 -15.08794 -14.45282 -14.26911 -13.80029 -13.58579 -13.17239 -12.98831 -12.79967 -12.49600 -11.94521 -11.74265 -11.53491 -11.24630 -10.56693 -10.10523 -9.38023 -8.20023 -6.32570 0.97657 1.43391 1.44393 1.55425 1.72190 1.96315 2.42400 3.13957 3.76413 3.89113 4.25122 4.35694 4.43230 4.62901 4.75551 4.85058 4.87899 5.02372 5.26562 5.47231 5.65606 5.80732 5.83100 6.12971 6.20809 6.81150 6.84530 7.37708 8.91849 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.074069 B = 0.009364 C = 0.009042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.933998 B = 2989.608212 C = 3095.955365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.384 5.384 3 N -0.338 5.338 4 C 0.046 3.954 5 C -0.299 4.299 6 C 0.090 3.910 7 C -0.042 4.042 8 C 0.041 3.959 9 C -0.542 4.542 10 H 0.070 0.930 11 C 0.000 4.000 12 N -0.935 5.935 13 Si 0.968 3.032 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.259 1.259 17 H 0.069 0.931 18 H 0.105 0.895 19 H 0.100 0.900 20 H 0.215 0.785 21 H 0.153 0.847 22 H 0.076 0.924 23 H 0.088 0.912 24 H -0.008 1.008 25 H -0.014 1.014 26 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.317 5.361 -7.837 9.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.167 5.167 3 N -0.160 5.160 4 C -0.139 4.139 5 C -0.328 4.328 6 C -0.038 4.038 7 C -0.081 4.081 8 C 0.003 3.997 9 C -0.580 4.580 10 H 0.088 0.912 11 C -0.198 4.198 12 N -0.575 5.575 13 Si 0.792 3.208 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.183 1.183 17 H 0.088 0.912 18 H 0.124 0.876 19 H 0.119 0.881 20 H 0.232 0.768 21 H 0.171 0.829 22 H 0.094 0.906 23 H 0.106 0.894 24 H 0.010 0.990 25 H 0.004 0.996 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.273 6.369 -7.673 10.053 hybrid contribution 0.363 -1.447 0.574 1.599 sum -0.910 4.922 -7.099 8.686 Atomic orbital electron populations 1.22050 0.73206 1.05603 1.03799 1.48734 1.07530 1.03158 1.57247 1.77163 1.02670 1.09001 1.27157 1.24313 0.95682 0.95101 0.98758 1.21526 0.96688 0.95718 1.18872 1.21656 0.92030 0.91235 0.98859 1.20304 1.01653 0.86808 0.99311 1.18852 0.95091 0.94841 0.90929 1.21661 1.44909 0.97893 0.93489 0.91222 1.26003 0.95403 1.03239 0.95147 1.70123 1.49893 1.38989 0.98537 0.85403 0.78642 0.78958 0.77777 1.19812 1.21122 1.18280 0.91202 0.87641 0.88138 0.76829 0.82880 0.90552 0.89363 0.98978 0.99578 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.61 11.27 127.77 1.44 4.05 15 2 N -0.38 -13.86 4.01 -356.04 -1.43 -15.29 15 3 N -0.34 -12.17 12.58 -57.02 -0.72 -12.89 15 4 C 0.05 1.49 12.03 85.23 1.02 2.51 15 5 C -0.30 -10.63 10.72 21.99 0.24 -10.39 15 6 C 0.09 3.46 6.19 41.41 0.26 3.72 15 7 C -0.04 -1.68 5.44 29.85 0.16 -1.51 15 8 C 0.04 2.11 4.96 29.85 0.15 2.26 15 9 C -0.54 -29.71 9.11 25.60 0.23 -29.48 15 10 H 0.07 3.57 7.74 -2.91 -0.02 3.55 15 11 C 0.00 -0.01 5.46 84.66 0.46 0.46 15 12 N -0.94 -56.64 13.29 21.45 0.28 -56.35 15 13 Si 0.97 43.07 29.54 68.60 2.03 45.09 15 14 H -0.27 -11.76 7.11 99.48 0.71 -11.06 15 15 H -0.29 -12.57 7.11 99.48 0.71 -11.86 15 16 H -0.26 -10.82 7.11 99.48 0.71 -10.11 15 17 H 0.07 1.98 8.14 -2.39 -0.02 1.96 15 18 H 0.11 2.37 8.14 -2.39 -0.02 2.35 15 19 H 0.10 2.48 6.98 -2.38 -0.02 2.47 15 20 H 0.22 4.85 8.06 -2.91 -0.02 4.82 15 21 H 0.15 4.95 8.06 -2.91 -0.02 4.93 15 22 H 0.08 2.79 6.95 -2.39 -0.02 2.77 15 23 H 0.09 3.33 8.14 -2.39 -0.02 3.31 15 24 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 15 25 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 15 26 H 0.26 14.99 8.31 -92.70 -0.77 14.22 15 Total: -1.00 -67.07 232.69 5.28 -61.79 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: 1.15 Total: 6.03 kcal Atomic # 6 Polarization: -32.35 SS G_CDS: 3.96 Total: -28.39 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: -1.86 Total: -84.53 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -67.07 5.28 -61.79 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230881296.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.340 kcal (2) G-P(sol) polarization free energy of solvation -67.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds