Wall clock time and date at job start Mon Mar 30 2020 01:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.50691 * 110.53844 * 190.84415 * 3 2 1 5 5 H 1.07997 * 120.00173 * 122.60914 * 4 3 2 6 6 C 1.37880 * 120.00303 * 302.61631 * 4 3 2 7 7 N 1.31515 * 119.99938 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 120.00187 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47162 * 59.99766 * 8 6 4 10 10 H 1.48499 * 109.47007 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.46900 * 299.99583 * 8 6 4 12 12 C 1.54625 * 110.48460 * 313.45829 * 3 2 1 13 13 C 1.54481 * 101.79703 * 143.45846 * 12 3 2 14 14 N 1.46825 * 105.44388 * 334.62720 * 13 12 3 15 15 C 1.34414 * 111.31785 * 16.96546 * 14 13 12 16 16 O 1.21279 * 124.94846 * 179.65872 * 15 14 13 17 17 H 0.96994 * 120.00023 * 179.97438 * 7 6 4 18 18 H 1.09002 * 110.96933 * 261.59436 * 12 3 2 19 19 H 1.09003 * 110.97286 * 25.32003 * 12 3 2 20 20 H 1.08998 * 110.24929 * 93.60353 * 13 12 3 21 21 H 1.09000 * 110.24296 * 215.60139 * 13 12 3 22 22 H 0.96996 * 124.33530 * 196.99833 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1361 1.3868 0.2655 5 1 3.7974 1.5619 1.1011 6 6 2.7748 2.4317 -0.5583 7 7 1.9697 2.2186 -1.5762 8 14 3.4300 4.1500 -0.2296 9 1 4.9134 4.1356 -0.2979 10 1 2.8970 5.0868 -1.2511 11 1 3.0009 4.5932 1.1211 12 6 3.1496 -0.9954 1.0514 13 6 4.3985 -1.5594 0.3383 14 7 4.1349 -1.3990 -1.0972 15 6 3.1377 -0.5247 -1.3162 16 8 2.7224 -0.2040 -2.4096 17 1 1.7153 2.9537 -2.1555 18 1 3.4252 -0.4799 1.9714 19 1 2.4246 -1.7845 1.2510 20 1 5.2845 -0.9929 0.6246 21 1 4.5286 -2.6136 0.5830 22 1 4.6181 -1.8646 -1.7976 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231385970.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:14 Heat of formation + Delta-G solvation = -33.977902 kcal Electronic energy + Delta-G solvation = -10693.011719 eV Core-core repulsion = 8633.090501 eV Total energy + Delta-G solvation = -2059.921218 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.01725 -37.24567 -36.61469 -34.85232 -32.12712 -28.82716 -26.32596 -22.68818 -22.00558 -19.66766 -18.04686 -17.07483 -16.61569 -16.10378 -15.00287 -14.66189 -14.55022 -14.20565 -13.58288 -13.46246 -13.08173 -12.82704 -12.69515 -12.36233 -12.21549 -11.91727 -11.22404 -10.75920 -10.22323 -9.66714 -8.17503 -6.42932 1.45477 1.47581 1.55652 2.04416 2.23182 2.27372 2.45098 2.87258 3.14271 3.82883 4.02187 4.25807 4.59094 4.69840 4.98290 5.27105 5.38163 5.62884 5.89301 6.28024 6.44442 6.64549 7.15536 7.29469 7.81738 8.82123 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.041256 B = 0.019649 C = 0.017977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.521121 B = 1424.643759 C = 1557.145499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C 0.280 3.720 3 C 0.111 3.889 4 C -0.532 4.532 5 H 0.106 0.894 6 C 0.009 3.991 7 N -0.875 5.875 8 Si 0.968 3.032 9 H -0.256 1.256 10 H -0.299 1.299 11 H -0.262 1.262 12 C -0.114 4.114 13 C 0.117 3.883 14 N -0.733 5.733 15 C 0.520 3.480 16 O -0.563 6.563 17 H 0.259 0.741 18 H 0.114 0.886 19 H 0.079 0.921 20 H 0.087 0.913 21 H 0.113 0.887 22 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.550 -5.957 6.543 13.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.220 5.220 2 C -0.036 4.036 3 C 0.104 3.896 4 C -0.570 4.570 5 H 0.124 0.876 6 C -0.197 4.197 7 N -0.507 5.507 8 Si 0.792 3.208 9 H -0.180 1.180 10 H -0.226 1.226 11 H -0.186 1.186 12 C -0.152 4.152 13 C -0.006 4.006 14 N -0.390 5.390 15 C 0.306 3.694 16 O -0.439 6.439 17 H 0.068 0.932 18 H 0.133 0.867 19 H 0.097 0.903 20 H 0.106 0.894 21 H 0.132 0.868 22 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 7.453 -5.663 5.895 11.062 hybrid contribution 0.408 1.055 -0.814 1.394 sum 7.861 -4.608 5.080 10.433 Atomic orbital electron populations 1.80795 1.14916 1.13821 1.12436 1.30032 0.95669 0.88579 0.89299 1.16912 0.79921 0.98927 0.93858 1.21097 1.31725 0.89000 1.15173 0.87617 1.26197 0.94843 1.04299 0.94330 1.70295 1.32433 1.32904 1.15098 0.85443 0.79359 0.78077 0.77909 1.18037 1.22581 1.18608 1.22757 0.97468 0.96823 0.98190 1.22179 0.97524 1.02987 0.77924 1.46080 1.37572 1.45044 1.10339 1.21268 0.80424 0.76952 0.90779 1.90639 1.63513 1.60049 1.29739 0.93237 0.86742 0.90280 0.89439 0.86850 0.75011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 -30.35 18.54 20.01 0.37 -29.97 14 2 C 0.28 14.82 12.41 89.44 1.11 15.93 14 3 C 0.11 5.08 0.51 -54.74 -0.03 5.05 14 4 C -0.53 -25.83 8.01 25.60 0.20 -25.63 14 5 H 0.11 4.49 7.59 -2.91 -0.02 4.47 14 6 C 0.01 0.47 5.19 84.66 0.44 0.91 14 7 N -0.87 -52.69 10.48 21.45 0.22 -52.47 14 8 Si 0.97 41.74 29.54 68.60 2.03 43.77 14 9 H -0.26 -10.26 7.11 99.48 0.71 -9.56 14 10 H -0.30 -13.48 7.11 99.48 0.71 -12.77 14 11 H -0.26 -10.69 7.11 99.48 0.71 -9.98 14 12 C -0.11 -3.43 6.19 31.65 0.20 -3.23 14 13 C 0.12 2.77 7.78 86.82 0.68 3.45 14 14 N -0.73 -24.20 6.24 -459.68 -2.87 -27.06 14 15 C 0.52 24.67 6.85 87.90 0.60 25.27 14 16 O -0.56 -32.86 16.21 -3.03 -0.05 -32.91 14 17 H 0.26 15.36 8.31 -92.71 -0.77 14.59 14 18 H 0.11 2.94 7.75 -2.39 -0.02 2.92 14 19 H 0.08 2.18 7.90 -2.39 -0.02 2.16 14 20 H 0.09 1.81 8.14 -2.39 -0.02 1.79 14 21 H 0.11 1.71 8.14 -2.39 -0.02 1.69 14 22 H 0.41 11.36 8.96 -92.71 -0.83 10.53 14 Total: -1.00 -74.38 206.05 3.33 -71.06 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 0.42 Total: 5.84 kcal Atomic # 6 Polarization: 18.55 SS G_CDS: 3.20 Total: 21.75 kcal Atomic # 7 Polarization: -107.23 SS G_CDS: -2.27 Total: -109.50 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -0.05 Total: -32.91 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -74.38 3.33 -71.06 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231385970.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.080 kcal (2) G-P(sol) polarization free energy of solvation -74.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds