Wall clock time and date at job start Mon Mar 30 2020 02:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47266 * 2 1 4 4 C 1.52998 * 109.47342 * 239.99763 * 2 1 3 5 5 C 1.50698 * 109.47154 * 65.00247 * 4 2 1 6 6 H 1.07999 * 119.99779 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99848 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99713 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00080 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47183 * 89.99952 * 9 7 5 11 11 H 1.48501 * 109.46778 * 209.99760 * 9 7 5 12 12 H 1.48497 * 109.46981 * 329.99803 * 9 7 5 13 13 C 1.50706 * 109.46830 * 119.99546 * 2 1 3 14 14 C 1.39870 * 126.03571 * 60.02575 * 13 2 1 15 15 N 1.30836 * 108.20019 * 179.71573 * 14 13 2 16 16 N 1.40090 * 108.20534 * 0.24683 * 15 14 13 17 17 H 0.97004 * 126.03573 * 180.02562 * 16 15 14 18 18 C 1.34942 * 107.92509 * 359.97438 * 16 15 14 19 19 H 1.09000 * 109.47256 * 60.00095 * 1 2 3 20 20 H 1.09003 * 109.47266 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47727 * 300.00628 * 1 2 3 22 22 H 1.09002 * 109.47108 * 185.00536 * 4 2 1 23 23 H 1.09000 * 109.46914 * 305.00373 * 4 2 1 24 24 H 0.97001 * 119.99835 * 180.02562 * 8 7 5 25 25 H 1.08002 * 125.90382 * 359.97438 * 14 13 2 26 26 H 1.08002 * 126.12737 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 1 1.0800 0.9741 -2.3757 7 6 1.9934 -0.4018 -3.7282 8 7 1.6451 0.2771 -4.7994 9 14 2.9637 -1.9885 -3.9026 10 1 2.0245 -3.1328 -4.0199 11 1 3.8128 -1.9182 -5.1189 12 1 3.8252 -2.1757 -2.7076 13 6 2.0322 -0.7103 1.2306 14 6 1.7737 -2.0409 1.5758 15 7 2.3826 -2.2957 2.7054 16 7 3.0442 -1.1320 3.1183 17 1 3.5764 -1.0331 3.9232 18 6 2.8112 -0.1731 2.1978 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 3.1263 -0.7996 -1.2054 23 1 1.6053 -1.7198 -1.2951 24 1 1.8924 -0.0458 -5.6800 25 1 1.1781 -2.7388 1.0060 26 1 3.1832 0.8405 2.2260 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231540585.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:08 Heat of formation + Delta-G solvation = 35.233606 kcal Electronic energy + Delta-G solvation = -10436.134141 eV Core-core repulsion = 8515.047255 eV Total energy + Delta-G solvation = -1921.086887 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.02339 -36.86023 -34.28613 -32.14621 -30.47737 -28.91984 -25.21683 -22.91489 -22.33024 -20.45661 -18.92951 -18.07029 -16.32781 -15.57307 -15.35189 -14.97896 -14.89719 -14.39606 -13.65568 -13.55497 -12.84875 -12.81127 -12.49724 -11.99963 -11.66507 -11.38053 -11.36035 -10.97870 -10.68601 -10.48256 -9.25268 -8.21745 -6.22625 1.05162 1.38213 1.39876 1.51817 1.94061 2.17244 2.41203 3.14171 3.91081 4.18086 4.40890 4.63451 4.72395 4.81506 4.94387 5.07197 5.18963 5.40846 5.49830 5.58484 5.68183 5.80064 5.88090 6.39697 6.55098 6.80917 6.85384 7.41123 8.94782 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.057084 B = 0.011757 C = 0.010630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.387383 B = 2380.908446 C = 2633.411628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.001 3.999 3 H 0.064 0.936 4 C 0.002 3.998 5 C -0.515 4.515 6 H 0.042 0.958 7 C 0.005 3.995 8 N -0.953 5.953 9 Si 0.942 3.058 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.253 1.253 13 C -0.239 4.239 14 C 0.046 3.954 15 N -0.329 5.329 16 N -0.471 5.471 17 H 0.452 0.548 18 C 0.064 3.936 19 H 0.039 0.961 20 H 0.049 0.951 21 H 0.057 0.943 22 H 0.008 0.992 23 H 0.014 0.986 24 H 0.263 0.737 25 H 0.183 0.817 26 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.778 -2.336 14.348 14.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.018 4.018 3 H 0.082 0.918 4 C -0.036 4.036 5 C -0.553 4.553 6 H 0.060 0.940 7 C -0.192 4.192 8 N -0.595 5.595 9 Si 0.766 3.234 10 H -0.193 1.193 11 H -0.213 1.213 12 H -0.177 1.177 13 C -0.250 4.250 14 C -0.139 4.139 15 N -0.152 5.152 16 N -0.181 5.181 17 H 0.298 0.702 18 C -0.083 4.083 19 H 0.058 0.942 20 H 0.068 0.932 21 H 0.076 0.924 22 H 0.027 0.973 23 H 0.032 0.968 24 H 0.072 0.928 25 H 0.200 0.800 26 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 3.026 -3.225 15.066 15.702 hybrid contribution 0.353 0.187 -1.007 1.083 sum 3.379 -3.038 14.060 14.776 Atomic orbital electron populations 1.21626 0.94976 1.01176 1.00303 1.19223 0.95349 0.97575 0.89681 0.91768 1.19527 0.95507 0.95592 0.92946 1.21523 1.33927 1.08805 0.91066 0.94009 1.25901 0.97009 1.00548 0.95694 1.70064 1.49254 1.41541 0.98639 0.85780 0.79489 0.80191 0.77916 1.19313 1.21301 1.17719 1.20404 1.08447 0.95525 1.00614 1.23923 0.99275 0.96757 0.93980 1.77173 1.14792 1.07385 1.15896 1.46216 1.42310 1.07624 1.21999 0.70187 1.22830 0.98797 0.96755 0.89938 0.94197 0.93235 0.92420 0.97332 0.96760 0.92775 0.79992 0.77529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.46 8.89 71.98 0.64 -3.82 15 2 C 0.00 0.06 2.70 -11.54 -0.03 0.02 15 3 H 0.06 2.43 8.11 -2.39 -0.02 2.41 15 4 C 0.00 0.08 3.37 29.85 0.10 0.19 15 5 C -0.52 -29.23 8.96 25.60 0.23 -29.00 15 6 H 0.04 2.57 7.30 -2.91 -0.02 2.55 15 7 C 0.00 0.27 5.47 84.65 0.46 0.73 15 8 N -0.95 -59.96 13.96 21.45 0.30 -59.66 15 9 Si 0.94 45.15 27.47 68.60 1.88 47.03 15 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 15 11 H -0.29 -13.54 7.11 99.48 0.71 -12.84 15 12 H -0.25 -11.54 6.54 99.48 0.65 -10.89 15 13 C -0.24 -7.69 4.80 -20.14 -0.10 -7.78 15 14 C 0.05 1.49 11.54 85.24 0.98 2.47 15 15 N -0.33 -10.03 12.70 -57.02 -0.72 -10.76 15 16 N -0.47 -11.03 7.36 -57.59 -0.42 -11.45 15 17 H 0.45 6.82 8.96 -213.32 -1.91 4.91 15 18 C 0.06 1.61 11.88 83.54 0.99 2.60 15 19 H 0.04 1.63 6.95 -2.39 -0.02 1.61 15 20 H 0.05 1.71 8.02 -2.39 -0.02 1.69 15 21 H 0.06 1.77 8.14 -2.39 -0.02 1.75 15 22 H 0.01 0.40 7.20 -2.39 -0.02 0.38 15 23 H 0.01 0.65 7.57 -2.39 -0.02 0.63 15 24 H 0.26 15.54 8.31 -92.71 -0.77 14.77 15 25 H 0.18 5.45 8.06 -2.91 -0.02 5.43 15 26 H 0.21 3.56 8.06 -2.91 -0.02 3.53 15 Total: -1.00 -68.66 226.53 3.52 -65.14 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -0.80 Total: 4.28 kcal Atomic # 6 Polarization: -37.87 SS G_CDS: 3.28 Total: -34.59 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -0.85 Total: -81.87 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.03 kcal Total: -68.66 3.52 -65.14 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231540585.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.376 kcal (2) G-P(sol) polarization free energy of solvation -68.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds