Wall clock time and date at job start Mon Mar 30 2020 01:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35716 * 124.94255 * 2 1 4 4 C 1.35325 * 107.17999 * 179.68511 * 3 2 1 5 5 C 1.41523 * 105.55694 * 0.41376 * 4 3 2 6 6 C 1.47711 * 126.46219 * 179.83823 * 5 4 3 7 7 O 1.21793 * 119.99935 * 359.71745 * 6 5 4 8 8 C 1.41786 * 119.99781 * 179.44208 * 6 5 4 9 9 H 1.08001 * 120.00396 * 0.27287 * 8 6 5 10 10 C 1.40334 * 120.00079 * 180.27813 * 8 6 5 11 11 N 1.30544 * 119.99758 * 359.97438 * 10 8 6 12 12 Si 1.86803 * 120.00370 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.46623 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47093 * 119.99659 * 12 10 8 15 15 H 1.48498 * 109.46958 * 240.00122 * 12 10 8 16 16 N 1.28480 * 124.94204 * 179.97438 * 2 1 3 17 17 H 1.08998 * 109.47673 * 270.01731 * 1 2 3 18 18 H 1.09006 * 109.47318 * 30.02062 * 1 2 3 19 19 H 1.09000 * 109.47528 * 150.01494 * 1 2 3 20 20 H 1.08008 * 126.41179 * 359.97438 * 3 2 1 21 21 H 1.07995 * 127.21802 * 180.25884 * 4 3 2 22 22 H 0.96999 * 119.99939 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2423 1.1125 0.0000 4 6 3.5310 0.6997 0.0071 5 6 3.4766 -0.7145 0.0015 6 6 4.6299 -1.6374 0.0024 7 8 5.7644 -1.1943 0.0033 8 6 4.4162 -3.0390 0.0082 9 1 3.4102 -3.4320 0.0074 10 6 5.5119 -3.9158 0.0149 11 7 6.7279 -3.4409 0.0155 12 14 5.2304 -5.7625 0.0232 13 1 3.7718 -6.0408 0.0218 14 1 5.8506 -6.3632 -1.1850 15 1 5.8451 -6.3514 1.2400 16 7 2.2008 -1.0532 0.0005 17 1 -0.3634 0.0003 1.0276 18 1 -0.3634 0.8898 -0.5142 19 1 -0.3634 -0.8901 -0.5136 20 1 1.8970 2.1359 -0.0004 21 1 4.4154 1.3194 0.0130 22 1 7.4852 -4.0470 0.0198 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231902244.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:06 Heat of formation + Delta-G solvation = 9.944840 kcal Electronic energy + Delta-G solvation = -10181.189961 eV Core-core repulsion = 8123.173376 eV Total energy + Delta-G solvation = -2058.016585 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -43.10370 -38.57680 -34.82709 -33.96174 -31.51926 -29.41781 -27.54766 -23.92416 -21.96276 -20.87999 -18.49306 -17.98972 -16.96566 -16.83811 -15.54322 -14.93410 -14.59613 -14.27412 -14.03085 -13.28283 -13.25008 -13.19250 -12.72413 -12.45780 -12.02971 -11.49959 -11.01006 -9.94549 -9.75857 -9.67631 -8.38126 -7.09001 0.98515 1.33645 1.36877 1.54477 1.56943 1.97735 2.22992 2.52375 3.68377 3.77733 4.12825 4.41843 4.47579 4.65712 4.71757 4.99319 5.03938 5.19259 5.68897 6.02331 6.20241 6.69075 6.73344 7.29364 8.22057 8.46886 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.063721 B = 0.012373 C = 0.010420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.306952 B = 2262.466305 C = 2686.622031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.304 5.304 3 C -0.004 4.004 4 C -0.243 4.243 5 C -0.038 4.038 6 C 0.399 3.601 7 O -0.591 6.591 8 C -0.530 4.530 9 H 0.082 0.918 10 C 0.021 3.979 11 N -0.785 5.785 12 Si 1.001 2.999 13 H -0.252 1.252 14 H -0.259 1.259 15 H -0.259 1.259 16 N -0.297 5.297 17 H 0.096 0.904 18 H 0.131 0.869 19 H 0.091 0.909 20 H 0.230 0.770 21 H 0.144 0.856 22 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.662 3.798 -0.073 13.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.093 5.093 3 C -0.147 4.147 4 C -0.271 4.271 5 C -0.196 4.196 6 C 0.297 3.703 7 O -0.482 6.482 8 C -0.562 4.562 9 H 0.100 0.900 10 C -0.198 4.198 11 N -0.415 5.415 12 Si 0.819 3.181 13 H -0.175 1.175 14 H -0.183 1.183 15 H -0.183 1.183 16 N -0.132 5.132 17 H 0.114 0.886 18 H 0.149 0.851 19 H 0.109 0.891 20 H 0.246 0.754 21 H 0.162 0.838 22 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.850 3.130 -0.072 13.226 hybrid contribution 0.760 0.131 0.025 0.771 sum -12.090 3.260 -0.048 12.522 Atomic orbital electron populations 1.22483 0.70812 1.06804 1.05566 1.46258 1.09172 1.02761 1.51061 1.23442 0.89518 0.95003 1.06767 1.22049 0.98729 0.94011 1.12273 1.23827 0.92791 0.95885 1.07114 1.17920 0.85012 0.88977 0.78353 1.90430 1.24958 1.80428 1.52421 1.21348 0.95048 0.92830 1.46971 0.89966 1.27334 0.93634 1.07580 0.91203 1.70101 1.00447 1.39438 1.31488 0.84934 0.80190 0.73623 0.79360 1.17467 1.18280 1.18306 1.73578 1.03526 1.14745 1.21342 0.88590 0.85118 0.89052 0.75371 0.83837 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.53 11.32 127.77 1.45 2.98 14 2 N -0.30 -10.39 3.72 -368.91 -1.37 -11.77 14 3 C 0.00 -0.12 11.49 83.42 0.96 0.83 14 4 C -0.24 -10.93 10.80 22.41 0.24 -10.69 14 5 C -0.04 -2.08 7.04 42.43 0.30 -1.79 14 6 C 0.40 25.94 6.94 25.65 0.18 26.11 14 7 O -0.59 -42.22 15.47 -4.65 -0.07 -42.29 14 8 C -0.53 -32.88 9.14 23.66 0.22 -32.66 14 9 H 0.08 4.85 7.69 -2.91 -0.02 4.82 14 10 C 0.02 1.22 5.50 85.39 0.47 1.69 14 11 N -0.79 -48.52 11.73 21.89 0.26 -48.26 14 12 Si 1.00 41.91 29.56 68.60 2.03 43.94 14 13 H -0.25 -10.08 7.11 99.48 0.71 -9.37 14 14 H -0.26 -10.12 7.11 99.48 0.71 -9.42 14 15 H -0.26 -10.14 7.11 99.48 0.71 -9.43 14 16 N -0.30 -14.05 11.67 -48.07 -0.56 -14.61 14 17 H 0.10 1.45 8.14 -2.39 -0.02 1.43 14 18 H 0.13 1.31 8.13 -2.38 -0.02 1.29 14 19 H 0.09 1.72 8.14 -2.39 -0.02 1.71 14 20 H 0.23 4.29 8.06 -2.91 -0.02 4.26 14 21 H 0.14 6.36 8.06 -2.91 -0.02 6.33 14 22 H 0.28 15.47 8.29 -92.71 -0.77 14.70 14 Total: -1.00 -85.49 212.21 5.31 -80.17 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 1.22 Total: 6.33 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 3.81 Total: -13.51 kcal Atomic # 7 Polarization: -72.96 SS G_CDS: -1.68 Total: -74.64 kcal Atomic # 8 Polarization: -42.22 SS G_CDS: -0.07 Total: -42.29 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -85.49 5.31 -80.17 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231902244.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.118 kcal (2) G-P(sol) polarization free energy of solvation -85.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds