Wall clock time and date at job start Mon Mar 30 2020 02:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.34856 * 125.89238 * 2 1 4 4 C 1.40885 * 107.41729 * 179.97438 * 3 2 1 5 5 C 1.34845 * 107.42195 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.89433 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47316 * 205.02433 * 6 5 4 8 8 N 1.46897 * 109.47465 * 325.02472 * 6 5 4 9 9 C 1.50703 * 109.47127 * 85.02487 * 6 5 4 10 10 H 1.07993 * 120.00192 * 335.35377 * 9 6 5 11 11 C 1.37881 * 119.99872 * 155.35344 * 9 6 5 12 12 N 1.31513 * 120.00115 * 6.04907 * 11 9 6 13 13 Si 1.86801 * 119.99972 * 186.05022 * 11 9 6 14 14 H 1.48494 * 109.47149 * 179.97438 * 13 11 9 15 15 H 1.48500 * 109.47141 * 300.00311 * 13 11 9 16 16 H 1.48503 * 109.46929 * 59.99831 * 13 11 9 17 17 N 1.36347 * 108.21838 * 0.26119 * 5 4 3 18 18 H 0.96992 * 125.63900 * 179.73856 * 17 5 4 19 19 H 1.09001 * 109.47102 * 90.02591 * 1 2 3 20 20 H 1.09003 * 109.47333 * 210.02605 * 1 2 3 21 21 H 1.09000 * 109.47351 * 330.02325 * 1 2 3 22 22 H 1.07999 * 126.28837 * 359.96511 * 3 2 1 23 23 H 1.08007 * 126.29219 * 179.97438 * 4 3 2 24 24 H 1.00905 * 110.99840 * 56.00353 * 8 6 5 25 25 H 1.00899 * 111.00679 * 179.97438 * 8 6 5 26 26 H 0.97005 * 119.99986 * 355.11482 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2975 1.0925 0.0000 4 6 3.6338 0.6460 0.0006 5 6 3.6090 -0.7022 0.0004 6 6 4.8133 -1.6080 0.0003 7 1 4.5440 -2.5705 -0.4346 8 7 5.8869 -0.9953 -0.7934 9 6 5.2888 -1.8117 1.4158 10 1 5.0670 -1.0729 2.1715 11 6 6.0070 -2.9414 1.7459 12 7 6.3797 -3.7819 0.8055 13 14 6.4506 -3.2783 3.5289 14 1 7.2178 -4.5467 3.6170 15 1 7.2776 -2.1616 4.0527 16 1 5.2086 -3.3946 4.3345 17 7 2.3063 -1.1046 -0.0063 18 1 1.9989 -2.0245 -0.0115 19 1 -0.3633 -0.0005 -1.0277 20 1 -0.3634 -0.8898 0.5142 21 1 -0.3634 0.8902 0.5135 22 1 1.9670 2.1207 -0.0005 23 1 4.5160 1.2691 0.0004 24 1 6.1098 -0.0733 -0.4494 25 1 6.7064 -1.5837 -0.8086 26 1 6.0896 -3.6451 -0.1100 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238476672.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:38 Heat of formation + Delta-G solvation = 25.894042 kcal Electronic energy + Delta-G solvation = -10523.787632 eV Core-core repulsion = 8602.295751 eV Total energy + Delta-G solvation = -1921.491881 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.37704 -34.98580 -31.64537 -30.47077 -30.04410 -26.33069 -24.51632 -21.97905 -19.64709 -19.07062 -17.18836 -16.12964 -14.24968 -13.99588 -13.82958 -13.12427 -12.92212 -12.75989 -12.35165 -11.93594 -11.86492 -11.72873 -11.10275 -10.86192 -10.22928 -9.82673 -9.47321 -8.69100 -8.08421 -7.47751 -6.97287 -6.43590 -4.28344 3.03873 3.36234 3.37061 3.56532 3.84379 4.03056 4.42970 5.19972 5.46048 5.55198 5.79790 5.97588 6.06105 6.20228 6.34359 6.41440 6.80706 7.08078 7.19472 7.80043 7.88111 8.02538 8.25147 8.37044 8.48817 8.66812 8.73077 9.44457 10.83785 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.053840 B = 0.012077 C = 0.011108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.937589 B = 2317.915588 C = 2520.001859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.024 4.024 3 C -0.197 4.197 4 C -0.217 4.217 5 C 0.091 3.909 6 C 0.251 3.749 7 H 0.043 0.957 8 N -0.848 5.848 9 C -0.624 4.624 10 H 0.052 0.948 11 C 0.026 3.974 12 N -0.906 5.906 13 Si 1.070 2.930 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.288 1.288 17 N -0.555 5.555 18 H 0.405 0.595 19 H 0.060 0.940 20 H 0.055 0.945 21 H 0.071 0.929 22 H 0.122 0.878 23 H 0.124 0.876 24 H 0.324 0.676 25 H 0.336 0.664 26 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.292 4.630 -0.341 8.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.135 4.135 3 C -0.223 4.223 4 C -0.241 4.241 5 C -0.024 4.024 6 C 0.141 3.859 7 H 0.061 0.939 8 N -0.376 5.376 9 C -0.665 4.665 10 H 0.071 0.929 11 C -0.180 4.180 12 N -0.542 5.542 13 Si 0.897 3.103 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.214 1.214 17 N -0.150 5.150 18 H 0.241 0.759 19 H 0.079 0.921 20 H 0.074 0.926 21 H 0.090 0.910 22 H 0.140 0.860 23 H 0.141 0.859 24 H 0.135 0.865 25 H 0.148 0.852 26 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.043 3.394 0.001 7.818 hybrid contribution -0.476 0.690 0.026 0.839 sum -7.518 4.085 0.027 8.556 Atomic orbital electron populations 1.20148 0.89213 1.02238 1.01520 1.20060 0.92638 0.86828 1.13995 1.20514 0.93263 0.96622 1.11895 1.20364 0.96222 0.93407 1.14114 1.20802 0.84508 0.94907 1.02162 1.17607 0.85041 0.90713 0.92499 0.93881 1.59386 1.12699 1.06783 1.58691 1.22592 1.39603 1.08817 0.95456 0.92944 1.25931 0.93468 0.92581 1.05973 1.70853 1.40988 1.39596 1.02786 0.83527 0.76456 0.76375 0.73908 1.20687 1.21292 1.21441 1.41819 1.06016 1.07624 1.59560 0.75944 0.92089 0.92563 0.91009 0.85994 0.85850 0.86505 0.85248 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.42 36.00 0.38 -0.60 15 2 C -0.02 -0.44 7.16 -81.79 -0.59 -1.03 15 3 C -0.20 -3.83 10.76 -39.78 -0.43 -4.25 15 4 C -0.22 -4.77 10.13 -39.78 -0.40 -5.17 15 5 C 0.09 2.10 6.19 -81.79 -0.51 1.59 15 6 C 0.25 6.34 2.85 -70.02 -0.20 6.14 15 7 H 0.04 1.16 6.98 -51.93 -0.36 0.80 15 8 N -0.85 -19.82 9.13 -6.65 -0.06 -19.88 15 9 C -0.62 -17.18 8.58 -34.44 -0.30 -17.48 15 10 H 0.05 1.50 7.81 -52.49 -0.41 1.09 15 11 C 0.03 0.72 5.45 -17.82 -0.10 0.63 15 12 N -0.91 -26.13 13.62 55.43 0.76 -25.38 15 13 Si 1.07 24.71 29.91 -169.99 -5.08 19.62 15 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 15 H -0.29 -6.39 7.11 56.52 0.40 -5.99 15 16 H -0.29 -6.45 7.11 56.52 0.40 -6.05 15 17 N -0.55 -11.17 6.08 -5.44 -0.03 -11.20 15 18 H 0.41 7.29 8.96 -40.82 -0.37 6.92 15 19 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 20 H 0.06 0.68 8.14 -51.93 -0.42 0.25 15 21 H 0.07 0.84 8.14 -51.93 -0.42 0.41 15 22 H 0.12 2.03 8.06 -52.49 -0.42 1.61 15 23 H 0.12 2.60 7.37 -52.48 -0.39 2.21 15 24 H 0.32 7.24 7.86 -39.29 -0.31 6.93 15 25 H 0.34 8.04 8.57 -39.29 -0.34 7.71 15 26 H 0.27 7.76 6.35 -40.82 -0.26 7.51 15 LS Contribution 228.01 15.07 3.44 3.44 Total: -1.00 -29.92 228.01 -6.04 -35.97 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -2.92 Total: 17.61 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -2.14 Total: -20.17 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: 0.66 Total: -56.46 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -5.08 Total: 19.62 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -29.92 -6.04 -35.97 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238476672.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.859 kcal (2) G-P(sol) polarization free energy of solvation -29.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds