Wall clock time and date at job start Mon Mar 30 2020 02:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.34858 * 125.89060 * 2 1 4 4 C 1.40900 * 107.41627 * 179.80426 * 3 2 1 5 5 C 1.50696 * 126.28857 * 180.24158 * 4 3 2 6 6 H 1.08997 * 109.47454 * 340.18588 * 5 4 3 7 7 N 1.46900 * 109.46908 * 220.18598 * 5 4 3 8 8 C 1.50705 * 109.47198 * 100.18905 * 5 4 3 9 9 H 1.08000 * 119.99892 * 359.97438 * 8 5 4 10 10 C 1.37870 * 120.00019 * 179.97438 * 8 5 4 11 11 N 1.31518 * 120.00034 * 0.02562 * 10 8 5 12 12 Si 1.86805 * 120.00209 * 179.97438 * 10 8 5 13 13 H 1.48501 * 109.46841 * 89.99850 * 12 10 8 14 14 H 1.48499 * 109.47070 * 210.00173 * 12 10 8 15 15 H 1.48498 * 109.46875 * 330.00289 * 12 10 8 16 16 C 1.34850 * 107.41621 * 0.37840 * 4 3 2 17 17 N 1.36341 * 125.89234 * 180.02562 * 2 1 3 18 18 H 0.97004 * 125.63352 * 359.94553 * 17 2 1 19 19 H 1.08997 * 109.47403 * 269.98441 * 1 2 3 20 20 H 1.09000 * 109.47258 * 29.98560 * 1 2 3 21 21 H 1.09000 * 109.47100 * 149.98076 * 1 2 3 22 22 H 1.07991 * 126.29023 * 0.02562 * 3 2 1 23 23 H 1.00901 * 111.00227 * 300.00430 * 7 5 4 24 24 H 1.00901 * 110.99880 * 63.95033 * 7 5 4 25 25 H 0.97001 * 120.00062 * 179.97438 * 11 10 8 26 26 H 1.08002 * 125.89234 * 179.89015 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2975 1.0925 0.0000 4 6 3.6339 0.6461 0.0046 5 6 4.8647 1.5155 0.0114 6 1 4.6051 2.5155 -0.3360 7 7 5.8787 0.9356 -0.8793 8 6 5.4143 1.5973 1.4123 9 1 4.9213 1.0725 2.2172 10 6 6.5464 2.3420 1.6662 11 7 7.1464 2.9815 0.6861 12 14 7.2273 2.4440 3.4028 13 1 8.2032 1.3454 3.6171 14 1 7.9044 3.7519 3.5930 15 1 6.1154 2.3156 4.3787 16 6 3.6090 -0.7022 -0.0013 17 7 2.3062 -1.1045 -0.0005 18 1 1.9988 -2.0246 -0.0002 19 1 -0.3634 -0.0003 1.0276 20 1 -0.3634 0.8901 -0.5136 21 1 -0.3633 -0.8898 -0.5141 22 1 1.9670 2.1206 0.0004 23 1 6.1364 0.0076 -0.5783 24 1 5.5585 0.9293 -1.8362 25 1 7.9427 3.5058 0.8648 26 1 4.4721 -1.3514 -0.0015 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238520505.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:45 Heat of formation + Delta-G solvation = 40.990226 kcal Electronic energy + Delta-G solvation = -10468.264872 eV Core-core repulsion = 8547.427611 eV Total energy + Delta-G solvation = -1920.837261 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.38940 -34.44617 -31.51494 -30.84463 -29.42557 -25.85983 -25.06219 -22.14888 -19.54818 -18.12331 -16.75793 -16.10360 -14.38804 -14.02343 -13.83840 -13.35462 -12.67705 -12.35545 -12.28599 -12.09096 -11.75059 -11.35834 -10.84840 -10.57764 -10.44396 -9.74740 -9.04153 -8.27483 -7.80635 -7.22584 -6.79934 -5.70739 -3.83385 2.90921 3.42512 3.48765 3.52335 3.88432 3.93944 4.63342 5.39280 5.46130 5.54166 5.75821 5.95294 6.04086 6.28952 6.53650 6.58164 7.05757 7.13308 7.58017 7.87142 7.99243 8.08991 8.26778 8.47056 8.86865 9.22837 9.36771 9.83895 11.33648 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.060569 B = 0.011432 C = 0.010702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.174130 B = 2448.585046 C = 2615.785942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.013 4.013 3 C -0.190 4.190 4 C -0.145 4.145 5 C 0.280 3.720 6 H 0.040 0.960 7 N -0.810 5.810 8 C -0.521 4.521 9 H 0.050 0.950 10 C 0.080 3.920 11 N -0.852 5.852 12 Si 0.880 3.120 13 H -0.283 1.283 14 H -0.288 1.288 15 H -0.277 1.277 16 C -0.039 4.039 17 N -0.568 5.568 18 H 0.401 0.599 19 H 0.062 0.938 20 H 0.073 0.927 21 H 0.053 0.947 22 H 0.126 0.874 23 H 0.313 0.687 24 H 0.295 0.705 25 H 0.253 0.747 26 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.480 -6.822 -1.764 11.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.125 4.125 3 C -0.217 4.217 4 C -0.154 4.154 5 C 0.170 3.830 6 H 0.058 0.942 7 N -0.334 5.334 8 C -0.560 4.560 9 H 0.069 0.931 10 C -0.125 4.125 11 N -0.487 5.487 12 Si 0.708 3.292 13 H -0.209 1.209 14 H -0.214 1.214 15 H -0.202 1.202 16 C -0.167 4.167 17 N -0.164 5.164 18 H 0.236 0.764 19 H 0.081 0.919 20 H 0.092 0.908 21 H 0.072 0.928 22 H 0.144 0.856 23 H 0.124 0.876 24 H 0.105 0.895 25 H 0.063 0.937 26 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.875 -6.196 -1.588 10.940 hybrid contribution -0.392 -1.148 0.879 1.498 sum -9.267 -7.345 -0.709 11.846 Atomic orbital electron populations 1.20177 0.89217 1.02168 1.01727 1.20191 0.92632 0.86976 1.12673 1.20675 0.93094 0.96957 1.10953 1.21417 0.97281 0.93772 1.02898 1.17576 0.81572 0.91168 0.92717 0.94206 1.59251 1.45464 1.25957 1.02748 1.20927 1.11276 1.31402 0.92396 0.93140 1.24969 0.96647 0.95146 0.95778 1.70116 1.18576 1.29798 1.30233 0.86817 0.79110 0.77154 0.86073 1.20918 1.21409 1.20182 1.21444 0.85117 0.96182 1.13956 1.41764 1.06364 1.07139 1.61141 0.76446 0.91914 0.90786 0.92790 0.85625 0.87618 0.89475 0.93719 0.82990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.42 36.00 0.38 -0.55 15 2 C -0.01 -0.22 7.16 -81.79 -0.59 -0.81 15 3 C -0.19 -3.93 10.71 -39.77 -0.43 -4.35 15 4 C -0.15 -3.29 5.07 -104.82 -0.53 -3.82 15 5 C 0.28 7.35 3.08 -70.02 -0.22 7.14 15 6 H 0.04 1.16 8.14 -51.93 -0.42 0.74 15 7 N -0.81 -19.89 8.43 -6.65 -0.06 -19.95 15 8 C -0.52 -15.04 8.71 -34.44 -0.30 -15.34 15 9 H 0.05 1.48 7.74 -52.49 -0.41 1.07 15 10 C 0.08 2.33 5.39 -17.82 -0.10 2.23 15 11 N -0.85 -25.74 12.77 55.43 0.71 -25.03 15 12 Si 0.88 22.07 29.54 -169.99 -5.02 17.05 15 13 H -0.28 -7.02 7.11 56.52 0.40 -6.62 15 14 H -0.29 -7.15 7.11 56.52 0.40 -6.75 15 15 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15 16 C -0.04 -0.75 11.31 -16.75 -0.19 -0.94 15 17 N -0.57 -9.23 6.07 -9.12 -0.06 -9.28 15 18 H 0.40 4.94 8.96 -40.82 -0.37 4.58 15 19 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 20 H 0.07 0.84 8.14 -51.93 -0.42 0.42 15 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 15 22 H 0.13 2.49 8.06 -52.49 -0.42 2.07 15 23 H 0.31 7.26 8.15 -39.29 -0.32 6.94 15 24 H 0.30 6.57 9.06 -39.29 -0.36 6.22 15 25 H 0.25 7.30 8.31 -40.82 -0.34 6.96 15 26 H 0.15 2.74 7.60 -52.49 -0.40 2.34 15 LS Contribution 230.44 15.07 3.47 3.47 Total: -1.00 -32.26 230.44 -6.02 -38.28 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -3.10 Total: 11.90 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -1.97 Total: -16.45 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.60 Total: -54.26 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -32.26 -6.02 -38.28 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238520505.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.270 kcal (2) G-P(sol) polarization free energy of solvation -32.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds