Wall clock time and date at job start Mon Mar 30 2020 02:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.34858 * 125.89060 * 2 1 4 4 C 1.40900 * 107.41627 * 179.80426 * 3 2 1 5 5 C 1.50696 * 126.28857 * 180.24158 * 4 3 2 6 6 H 1.08997 * 109.47454 * 340.18588 * 5 4 3 7 7 N 1.46900 * 109.46908 * 220.18598 * 5 4 3 8 8 C 1.50705 * 109.47198 * 100.18905 * 5 4 3 9 9 H 1.08000 * 119.99892 * 359.97438 * 8 5 4 10 10 C 1.37870 * 120.00019 * 179.97438 * 8 5 4 11 11 N 1.31518 * 120.00034 * 0.02562 * 10 8 5 12 12 Si 1.86805 * 120.00209 * 179.97438 * 10 8 5 13 13 H 1.48501 * 109.46841 * 89.99850 * 12 10 8 14 14 H 1.48499 * 109.47070 * 210.00173 * 12 10 8 15 15 H 1.48498 * 109.46875 * 330.00289 * 12 10 8 16 16 C 1.34850 * 107.41621 * 0.37840 * 4 3 2 17 17 N 1.36341 * 125.89234 * 180.02562 * 2 1 3 18 18 H 0.97004 * 125.63352 * 359.94553 * 17 2 1 19 19 H 1.08997 * 109.47403 * 269.98441 * 1 2 3 20 20 H 1.09000 * 109.47258 * 29.98560 * 1 2 3 21 21 H 1.09000 * 109.47100 * 149.98076 * 1 2 3 22 22 H 1.07991 * 126.29023 * 0.02562 * 3 2 1 23 23 H 1.00901 * 111.00227 * 300.00430 * 7 5 4 24 24 H 1.00901 * 110.99880 * 63.95033 * 7 5 4 25 25 H 0.97001 * 120.00062 * 179.97438 * 11 10 8 26 26 H 1.08002 * 125.89234 * 179.89015 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2975 1.0925 0.0000 4 6 3.6339 0.6461 0.0046 5 6 4.8647 1.5155 0.0114 6 1 4.6051 2.5155 -0.3360 7 7 5.8787 0.9356 -0.8793 8 6 5.4143 1.5973 1.4123 9 1 4.9213 1.0725 2.2172 10 6 6.5464 2.3420 1.6662 11 7 7.1464 2.9815 0.6861 12 14 7.2273 2.4440 3.4028 13 1 8.2032 1.3454 3.6171 14 1 7.9044 3.7519 3.5930 15 1 6.1154 2.3156 4.3787 16 6 3.6090 -0.7022 -0.0013 17 7 2.3062 -1.1045 -0.0005 18 1 1.9988 -2.0246 -0.0002 19 1 -0.3634 -0.0003 1.0276 20 1 -0.3634 0.8901 -0.5136 21 1 -0.3633 -0.8898 -0.5141 22 1 1.9670 2.1206 0.0004 23 1 6.1364 0.0076 -0.5783 24 1 5.5585 0.9293 -1.8362 25 1 7.9427 3.5058 0.8648 26 1 4.4721 -1.3514 -0.0015 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238520505.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:45 Heat of formation + Delta-G solvation = 17.039855 kcal Electronic energy + Delta-G solvation = -10469.303438 eV Core-core repulsion = 8547.427611 eV Total energy + Delta-G solvation = -1921.875827 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.86859 -36.41986 -33.58506 -32.12275 -31.05645 -27.95158 -26.47363 -24.11246 -21.00142 -19.82721 -18.38908 -18.07343 -16.48383 -15.85743 -15.30517 -14.77683 -14.36255 -14.24329 -13.56303 -13.46266 -13.25830 -12.95560 -12.78212 -12.53120 -12.23522 -11.79628 -11.18664 -10.50067 -9.39859 -8.90271 -8.56651 -7.90853 -6.12291 1.43215 1.44577 1.48383 1.55135 2.22750 2.54491 2.61764 3.30905 4.22164 4.46088 4.56023 4.60306 4.68584 4.84520 5.00712 5.16251 5.32991 5.47404 5.77051 5.84227 6.18082 6.36150 6.39640 6.76452 7.01519 7.21033 7.37767 7.59840 9.12006 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.060569 B = 0.011432 C = 0.010702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.174130 B = 2448.585046 C = 2615.785942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.014 3.986 3 C -0.237 4.237 4 C -0.185 4.185 5 C 0.286 3.714 6 H -0.006 1.006 7 N -0.818 5.818 8 C -0.537 4.537 9 H 0.040 0.960 10 C 0.030 3.970 11 N -0.885 5.885 12 Si 0.949 3.051 13 H -0.275 1.275 14 H -0.283 1.283 15 H -0.274 1.274 16 C -0.033 4.033 17 N -0.548 5.548 18 H 0.425 0.575 19 H 0.077 0.923 20 H 0.083 0.917 21 H 0.083 0.917 22 H 0.117 0.883 23 H 0.321 0.679 24 H 0.308 0.692 25 H 0.254 0.746 26 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.710 -8.506 -1.122 13.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.099 4.099 3 C -0.263 4.263 4 C -0.194 4.194 5 C 0.176 3.824 6 H 0.012 0.988 7 N -0.344 5.344 8 C -0.575 4.575 9 H 0.058 0.942 10 C -0.173 4.173 11 N -0.522 5.522 12 Si 0.775 3.225 13 H -0.200 1.200 14 H -0.209 1.209 15 H -0.199 1.199 16 C -0.163 4.163 17 N -0.146 5.146 18 H 0.264 0.736 19 H 0.096 0.904 20 H 0.101 0.899 21 H 0.102 0.898 22 H 0.135 0.865 23 H 0.133 0.867 24 H 0.118 0.882 25 H 0.063 0.937 26 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -10.127 -7.919 -0.947 12.890 hybrid contribution -0.088 -0.647 0.636 0.912 sum -10.215 -8.566 -0.311 13.335 Atomic orbital electron populations 1.20337 0.85304 1.04177 1.03292 1.20758 0.94761 0.85793 1.08634 1.20785 0.93174 0.98045 1.14269 1.21093 0.96743 0.95020 1.06524 1.17168 0.83558 0.90098 0.91612 0.98768 1.59032 1.45615 1.26405 1.03320 1.21205 1.11488 1.31363 0.93489 0.94165 1.25734 0.96949 0.94726 0.99845 1.70251 1.18984 1.30521 1.32397 0.85732 0.78359 0.77396 0.81018 1.20024 1.20866 1.19893 1.21455 0.86844 0.95106 1.12922 1.41717 1.05122 1.08383 1.59359 0.73615 0.90410 0.89862 0.89769 0.86464 0.86721 0.88152 0.93709 0.81700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.52 10.42 71.23 0.74 -0.78 15 2 C 0.01 0.45 7.16 41.08 0.29 0.75 15 3 C -0.24 -9.81 10.71 22.14 0.24 -9.58 15 4 C -0.19 -8.50 5.07 -19.99 -0.10 -8.60 15 5 C 0.29 15.58 3.08 43.42 0.13 15.71 15 6 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 15 7 N -0.82 -41.04 8.43 -174.95 -1.48 -42.52 15 8 C -0.54 -31.68 8.71 25.60 0.22 -31.45 15 9 H 0.04 2.39 7.74 -2.91 -0.02 2.37 15 10 C 0.03 1.76 5.39 84.65 0.46 2.22 15 11 N -0.88 -54.52 12.77 21.45 0.27 -54.24 15 12 Si 0.95 45.77 29.54 68.60 2.03 47.80 15 13 H -0.27 -12.81 7.11 99.48 0.71 -12.10 15 14 H -0.28 -13.32 7.11 99.48 0.71 -12.61 15 15 H -0.27 -12.97 7.11 99.48 0.71 -12.26 15 16 C -0.03 -1.26 11.31 83.21 0.94 -0.31 15 17 N -0.55 -16.21 6.07 -182.77 -1.11 -17.32 15 18 H 0.42 8.70 8.96 -92.71 -0.83 7.87 15 19 H 0.08 1.46 8.14 -2.39 -0.02 1.44 15 20 H 0.08 1.62 8.14 -2.39 -0.02 1.60 15 21 H 0.08 1.28 8.14 -2.39 -0.02 1.26 15 22 H 0.12 4.86 8.06 -2.92 -0.02 4.83 15 23 H 0.32 15.01 8.15 -89.69 -0.73 14.28 15 24 H 0.31 13.99 9.06 -89.69 -0.81 13.18 15 25 H 0.25 14.86 8.31 -92.71 -0.77 14.09 15 26 H 0.17 5.68 7.60 -2.91 -0.02 5.66 15 Total: -1.00 -70.57 230.44 1.47 -69.10 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: -1.17 Total: 29.24 kcal Atomic # 6 Polarization: -34.98 SS G_CDS: 2.93 Total: -32.05 kcal Atomic # 7 Polarization: -111.77 SS G_CDS: -2.31 Total: -114.08 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -70.57 1.47 -69.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238520505.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.137 kcal (2) G-P(sol) polarization free energy of solvation -70.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds