Wall clock time and date at job start Mon Mar 30 2020 02:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34849 * 126.28858 * 2 1 4 4 N 1.36342 * 108.21794 * 179.97438 * 3 2 1 5 5 H 0.96998 * 125.63892 * 180.02562 * 4 3 2 6 6 C 1.36345 * 108.72929 * 0.02562 * 4 3 2 7 7 C 1.50699 * 125.89654 * 179.97438 * 6 4 3 8 8 H 1.08993 * 109.47840 * 185.01865 * 7 6 4 9 9 N 1.46906 * 109.46867 * 305.02374 * 7 6 4 10 10 C 1.50706 * 109.46824 * 65.01487 * 7 6 4 11 11 H 1.07999 * 120.00193 * 0.02562 * 10 7 6 12 12 C 1.37879 * 119.99398 * 180.02562 * 10 7 6 13 13 N 1.31514 * 119.99350 * 180.02562 * 12 10 7 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 7 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 10 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 10 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 10 18 18 C 1.34855 * 108.21458 * 0.23631 * 6 4 3 19 19 H 1.08996 * 109.47311 * 90.02934 * 1 2 3 20 20 H 1.09008 * 109.47034 * 210.02445 * 1 2 3 21 21 H 1.08997 * 109.47004 * 330.01967 * 1 2 3 22 22 H 1.07999 * 125.89363 * 359.94260 * 3 2 1 23 23 H 1.00899 * 110.99290 * 296.04000 * 9 7 6 24 24 H 1.00897 * 111.00195 * 59.99123 * 9 7 6 25 25 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 26 26 H 1.08002 * 126.28939 * 179.76345 * 18 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3051 1.0869 0.0000 4 7 3.6013 0.6640 0.0006 5 1 4.3831 1.2381 0.0011 6 6 3.6170 -0.6993 0.0004 7 6 4.8478 -1.5688 0.0003 8 1 4.5541 -2.6145 -0.0898 9 7 5.7064 -1.2019 -1.1339 10 6 5.6043 -1.3686 1.2883 11 1 5.2308 -0.6809 2.0326 12 6 6.7731 -2.0635 1.5163 13 7 7.4330 -1.8892 2.6405 14 14 7.4194 -3.2524 0.2287 15 1 6.8588 -4.6047 0.4778 16 1 7.0119 -2.7887 -1.1220 17 1 8.9013 -3.3088 0.3064 18 6 2.3409 -1.1355 -0.0056 19 1 -0.3634 -0.0005 -1.0276 20 1 -0.3633 -0.8898 0.5143 21 1 -0.3633 0.8901 0.5135 22 1 1.9747 2.1151 -0.0009 23 1 5.2450 -1.3881 -2.0116 24 1 5.9924 -0.2362 -1.0733 25 1 8.2551 -2.3783 2.8012 26 1 2.0177 -2.1660 -0.0109 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238555012.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:14 Heat of formation + Delta-G solvation = 17.754379 kcal Electronic energy + Delta-G solvation = -10533.864662 eV Core-core repulsion = 8612.019819 eV Total energy + Delta-G solvation = -1921.844843 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.91587 -36.51518 -33.93792 -33.05617 -30.26980 -28.31201 -26.91322 -23.69632 -20.98595 -19.99410 -18.80923 -18.25350 -16.57405 -16.03656 -15.20521 -14.88451 -14.62944 -14.20120 -13.69944 -13.54117 -13.38786 -13.13599 -12.75861 -12.45200 -12.04013 -11.88973 -11.37574 -10.76953 -9.42650 -9.07026 -8.61972 -8.25775 -6.40425 1.51436 1.53976 1.59670 1.94883 2.15477 2.60431 2.66600 3.14147 4.19198 4.30294 4.40347 4.56830 4.66822 4.89000 4.99605 5.02820 5.28933 5.41067 5.52379 5.66440 6.07846 6.26907 6.34551 6.50098 6.73579 6.91704 6.98781 7.38656 8.87217 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.070466 B = 0.011827 C = 0.011437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.259382 B = 2366.990433 C = 2447.552210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.192 4.192 3 C -0.031 4.031 4 N -0.549 5.549 5 H 0.416 0.584 6 C 0.014 3.986 7 C 0.254 3.746 8 H 0.051 0.949 9 N -0.832 5.832 10 C -0.522 4.522 11 H 0.022 0.978 12 C 0.026 3.974 13 N -0.951 5.951 14 Si 0.933 3.067 15 H -0.301 1.301 16 H -0.155 1.155 17 H -0.314 1.314 18 C -0.235 4.235 19 H 0.067 0.933 20 H 0.056 0.944 21 H 0.070 0.930 22 H 0.189 0.811 23 H 0.332 0.668 24 H 0.332 0.668 25 H 0.263 0.737 26 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.529 4.386 -9.415 14.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.198 4.198 3 C -0.161 4.161 4 N -0.143 5.143 5 H 0.252 0.748 6 C -0.103 4.103 7 C 0.144 3.856 8 H 0.069 0.931 9 N -0.361 5.361 10 C -0.561 4.561 11 H 0.040 0.960 12 C -0.173 4.173 13 N -0.591 5.591 14 Si 0.758 3.242 15 H -0.229 1.229 16 H -0.076 1.076 17 H -0.242 1.242 18 C -0.260 4.260 19 H 0.086 0.914 20 H 0.075 0.925 21 H 0.089 0.911 22 H 0.206 0.794 23 H 0.145 0.855 24 H 0.145 0.855 25 H 0.071 0.929 26 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.775 3.905 -9.071 13.211 hybrid contribution 0.279 0.319 0.247 0.491 sum -8.496 4.224 -8.824 12.957 Atomic orbital electron populations 1.20081 0.88586 1.02161 1.01811 1.19872 0.96855 0.92287 1.10836 1.22069 0.82389 1.00003 1.11682 1.41859 1.08216 1.06239 1.57986 0.74758 1.21616 0.97821 0.84226 1.06592 1.17838 0.84867 0.93258 0.89663 0.93128 1.59741 1.44726 1.27234 1.04440 1.20984 1.07946 1.25965 1.01165 0.95962 1.25946 0.96135 0.98105 0.97103 1.70110 1.17648 1.43877 1.27428 0.86254 0.74836 0.76339 0.86787 1.22866 1.07564 1.24245 1.20800 0.92154 0.98855 1.14178 0.91390 0.92519 0.91120 0.79381 0.85519 0.85481 0.92856 0.85646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.69 10.38 71.24 0.74 -0.95 15 2 C -0.19 -6.28 6.14 -19.99 -0.12 -6.40 15 3 C -0.03 -0.95 11.85 83.21 0.99 0.04 15 4 N -0.55 -19.11 6.07 -182.77 -1.11 -20.22 15 5 H 0.42 13.19 8.96 -92.71 -0.83 12.36 15 6 C 0.01 0.56 5.89 41.08 0.24 0.80 15 7 C 0.25 11.43 2.59 43.42 0.11 11.54 15 8 H 0.05 2.34 7.53 -2.39 -0.02 2.33 15 9 N -0.83 -31.60 5.82 -174.94 -1.02 -32.62 15 10 C -0.52 -29.51 9.29 25.60 0.24 -29.28 15 11 H 0.02 1.42 7.98 -2.91 -0.02 1.40 15 12 C 0.03 1.51 5.47 84.66 0.46 1.97 15 13 N -0.95 -60.50 13.96 21.45 0.30 -60.20 15 14 Si 0.93 44.45 26.94 68.60 1.85 46.30 15 15 H -0.30 -14.53 7.11 99.48 0.71 -13.82 15 16 H -0.16 -6.45 5.17 99.48 0.51 -5.94 15 17 H -0.31 -15.43 7.11 99.48 0.71 -14.72 15 18 C -0.23 -9.08 10.69 22.14 0.24 -8.84 15 19 H 0.07 1.45 8.14 -2.39 -0.02 1.43 15 20 H 0.06 1.37 8.14 -2.38 -0.02 1.35 15 21 H 0.07 1.45 8.14 -2.39 -0.02 1.43 15 22 H 0.19 4.20 8.06 -2.91 -0.02 4.17 15 23 H 0.33 10.70 9.06 -89.69 -0.81 9.89 15 24 H 0.33 12.03 8.98 -89.70 -0.81 11.23 15 25 H 0.26 15.83 8.31 -92.70 -0.77 15.06 15 26 H 0.13 4.67 8.06 -2.91 -0.02 4.65 15 Total: -1.00 -68.52 225.85 1.48 -67.04 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: -1.44 Total: 30.81 kcal Atomic # 6 Polarization: -34.01 SS G_CDS: 2.90 Total: -31.11 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -1.83 Total: -113.04 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.85 Total: 46.30 kcal Total: -68.52 1.48 -67.04 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238555012.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.797 kcal (2) G-P(sol) polarization free energy of solvation -68.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds