Wall clock time and date at job start Mon Mar 30 2020 01:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00320 * 2 1 4 4 H 1.48504 * 109.46882 * 239.99835 * 3 2 1 5 5 H 1.48498 * 109.47011 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47305 * 120.00140 * 3 2 1 7 7 C 1.37882 * 119.99644 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99825 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00134 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47127 * 179.97438 * 9 7 2 11 11 C 1.31004 * 119.99903 * 124.99814 * 10 9 7 12 12 C 1.50700 * 119.99903 * 179.97438 * 11 10 9 13 13 H 1.09010 * 115.54729 * 334.32934 * 12 11 10 14 14 C 1.52992 * 117.49831 * 188.62422 * 12 11 10 15 15 C 1.52993 * 117.50154 * 119.99646 * 12 11 10 16 16 H 1.09004 * 117.49624 * 359.97438 * 15 12 11 17 17 C 1.50700 * 117.50466 * 214.97893 * 15 12 11 18 18 O 1.20758 * 120.00061 * 119.99827 * 17 15 12 19 19 H 0.97001 * 119.99675 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47628 * 59.99794 * 9 7 2 21 21 H 1.08997 * 109.46763 * 299.99644 * 9 7 2 22 22 H 1.07995 * 119.99962 * 305.26841 * 10 9 7 23 23 H 1.07999 * 120.00108 * 0.02562 * 11 10 9 24 24 H 1.08999 * 117.50159 * 359.97438 * 14 12 11 25 25 H 1.09008 * 117.50075 * 145.02280 * 14 12 11 26 26 H 1.08000 * 119.99760 * 300.00680 * 17 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.1612 -4.5654 0.9299 12 6 3.1401 -5.7112 0.9296 13 1 3.5663 -5.9650 -0.0411 14 6 2.8874 -6.8564 1.9120 15 6 4.0355 -5.8757 2.1591 16 1 3.9169 -5.1550 2.9682 17 6 5.4391 -6.3770 1.9359 18 8 6.3821 -5.6978 2.2641 19 1 -0.4850 0.8401 -0.0004 20 1 0.6246 -2.5572 -0.8896 21 1 0.6240 -2.5567 0.8903 22 1 2.9916 -3.7042 -0.7631 23 1 1.4023 -4.5037 1.6958 24 1 2.0134 -6.7810 2.5589 25 1 3.1474 -7.8642 1.5879 26 1 5.6015 -7.3435 1.4823 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238646010.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:38 Heat of formation + Delta-G solvation = -9.596929 kcal Electronic energy + Delta-G solvation = -9789.799785 eV Core-core repulsion = 7834.476149 eV Total energy + Delta-G solvation = -1955.323636 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.28272 -37.15407 -34.09536 -31.96954 -27.71417 -25.13753 -23.36373 -21.12799 -20.38183 -18.87710 -16.37065 -16.04660 -15.69065 -14.70631 -14.30408 -13.82098 -13.12842 -12.49758 -12.14896 -12.10895 -11.46167 -11.01047 -10.74641 -10.63800 -10.46204 -10.35116 -9.67442 -9.45228 -9.40326 -8.45554 -7.92443 -6.03732 -4.07164 1.85285 3.00066 3.33303 3.37022 3.41072 4.04702 4.24661 4.45347 4.86528 4.94847 4.99048 5.31761 5.55257 5.60904 5.80409 5.93558 6.08324 6.24314 6.79579 7.27489 7.39352 7.40199 7.59787 7.87146 7.95822 8.35863 8.98355 9.56940 11.06862 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.052933 B = 0.007986 C = 0.007139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.842989 B = 3505.243331 C = 3920.913046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.035 3.965 10 C -0.080 4.080 11 C -0.203 4.203 12 C -0.068 4.068 13 H 0.107 0.893 14 C -0.157 4.157 15 C -0.240 4.240 16 H 0.124 0.876 17 C 0.374 3.626 18 O -0.464 6.464 19 H 0.262 0.738 20 H 0.032 0.968 21 H 0.025 0.975 22 H 0.092 0.908 23 H 0.107 0.893 24 H 0.102 0.898 25 H 0.099 0.901 26 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.779 -12.387 1.966 13.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.098 4.098 11 C -0.221 4.221 12 C -0.086 4.086 13 H 0.125 0.875 14 C -0.194 4.194 15 C -0.259 4.259 16 H 0.142 0.858 17 C 0.231 3.769 18 O -0.335 6.335 19 H 0.072 0.928 20 H 0.050 0.950 21 H 0.043 0.957 22 H 0.111 0.889 23 H 0.125 0.875 24 H 0.121 0.879 25 H 0.117 0.883 26 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.140 -11.892 2.150 13.133 hybrid contribution 0.344 0.940 0.057 1.002 sum 5.484 -10.952 2.207 12.446 Atomic orbital electron populations 1.69950 1.06066 1.26906 1.50525 1.25018 0.94892 0.99317 0.95134 0.86595 0.79542 0.82788 0.78755 1.20145 1.21211 1.20145 1.21066 0.93094 0.90360 1.51105 0.92556 1.18426 0.93282 0.90466 0.97972 1.23444 0.97147 0.93911 0.95295 1.21902 1.00978 0.96572 1.02622 1.21155 0.97591 0.97102 0.92750 0.87530 1.23001 0.98651 0.94447 1.03335 1.23409 0.92231 1.05606 1.04623 0.85797 1.25348 0.88119 0.89703 0.73720 1.90392 1.45049 1.58260 1.39817 0.92808 0.95014 0.95715 0.88944 0.87486 0.87938 0.88269 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.86 13.29 55.43 0.74 -26.12 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 15 3 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 15 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 7 C -0.52 -14.83 9.09 -34.44 -0.31 -15.14 15 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 15 9 C 0.04 0.91 5.42 -29.04 -0.16 0.76 15 10 C -0.08 -1.69 9.09 -36.03 -0.33 -2.01 15 11 C -0.20 -3.66 9.27 -36.03 -0.33 -4.00 15 12 C -0.07 -0.94 5.69 -91.78 -0.52 -1.46 15 13 H 0.11 1.34 8.14 -51.92 -0.42 0.92 15 14 C -0.16 -1.67 9.94 -26.73 -0.27 -1.94 15 15 C -0.24 -3.10 5.97 -91.77 -0.55 -3.65 15 16 H 0.12 1.81 8.14 -51.93 -0.42 1.39 15 17 C 0.37 4.54 11.33 36.01 0.41 4.95 15 18 O -0.46 -7.72 17.92 6.00 0.11 -7.61 15 19 H 0.26 7.42 8.31 -40.82 -0.34 7.08 15 20 H 0.03 0.87 8.14 -51.93 -0.42 0.44 15 21 H 0.02 0.67 7.79 -51.93 -0.40 0.27 15 22 H 0.09 1.85 8.05 -52.49 -0.42 1.42 15 23 H 0.11 1.95 7.84 -52.49 -0.41 1.54 15 24 H 0.10 1.07 8.14 -51.93 -0.42 0.65 15 25 H 0.10 0.78 8.14 -51.92 -0.42 0.35 15 26 H 0.09 0.72 8.06 -52.49 -0.42 0.30 15 LS Contribution 241.82 15.07 3.64 3.64 Total: -1.00 -31.57 241.82 -6.01 -37.58 By element: Atomic # 1 Polarization: -0.09 SS G_CDS: -3.32 Total: -3.41 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -2.16 Total: -20.93 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.74 Total: -26.12 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: 0.11 Total: -7.61 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -31.57 -6.01 -37.58 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238646010.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.981 kcal (2) G-P(sol) polarization free energy of solvation -31.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds