Wall clock time and date at job start Mon Mar 30 2020 01:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29045 * 1 3 3 N 1.38284 * 119.99889 * 2 1 4 4 C 1.36946 * 126.23739 * 180.16004 * 3 2 1 5 5 N 1.30019 * 109.75936 * 180.26218 * 4 3 2 6 6 C 1.36025 * 109.49763 * 359.75420 * 5 4 3 7 7 C 1.40776 * 126.42447 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00354 * 179.97438 * 7 6 5 9 9 C 1.39549 * 119.99751 * 359.96486 * 7 6 5 10 10 N 1.31215 * 120.00062 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 119.99527 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47127 * 89.99689 * 11 9 7 13 13 H 1.48505 * 109.47078 * 209.99392 * 11 9 7 14 14 H 1.48496 * 109.47781 * 329.99517 * 11 9 7 15 15 C 1.37175 * 126.23998 * 359.97438 * 3 2 1 16 16 N 1.37595 * 126.96710 * 0.02562 * 15 3 2 17 17 H 0.96998 * 120.00179 * 179.97438 * 1 2 3 18 18 H 1.08002 * 119.99934 * 179.97438 * 2 1 3 19 19 H 1.08002 * 125.11757 * 0.02562 * 4 3 2 20 20 H 0.96997 * 120.00100 * 180.02562 * 10 9 7 21 21 H 0.96999 * 120.00123 * 179.68679 * 16 15 3 22 22 H 0.97005 * 119.99768 * 359.68290 * 16 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2904 0.0000 0.0000 3 7 1.9818 1.1976 0.0000 4 6 3.3432 1.3464 -0.0031 5 7 3.6472 2.6105 0.0035 6 6 2.5066 3.3518 0.0058 7 6 2.4230 4.7570 0.0121 8 1 1.4573 5.2406 0.0129 9 6 3.5880 5.5252 0.0175 10 7 4.7613 4.9378 0.0172 11 14 3.4770 7.3899 0.0252 12 1 3.4449 7.8781 1.4273 13 1 4.6593 7.9590 -0.6701 14 1 2.2386 7.8151 -0.6754 15 6 1.4291 2.4531 -0.0005 16 7 0.0896 2.7674 -0.0006 17 1 -0.4850 -0.8400 -0.0004 18 1 1.8304 -0.9353 0.0004 19 1 4.0568 0.5357 -0.0063 20 1 5.5711 5.4718 0.0214 21 1 -0.1907 3.6960 0.0036 22 1 -0.5745 2.0603 -0.0049 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238661374.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:08 Heat of formation + Delta-G solvation = 69.901096 kcal Electronic energy + Delta-G solvation = -10351.624840 eV Core-core repulsion = 8328.500905 eV Total energy + Delta-G solvation = -2023.123935 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.071 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.01311 -36.87104 -35.01213 -34.49586 -32.25512 -29.26608 -26.52887 -23.89435 -22.11661 -20.54332 -18.89128 -17.57702 -17.09658 -16.78894 -16.18320 -15.89005 -15.22185 -14.46148 -14.15162 -12.95266 -12.75778 -12.48789 -12.21089 -11.77775 -11.31431 -10.93701 -10.48286 -10.11251 -9.68230 -8.07935 -8.07237 -5.64931 0.75730 1.46439 1.46843 1.59092 2.08448 2.34921 2.44260 2.77589 3.72270 3.82623 3.93306 4.26271 4.58205 5.00675 5.44031 5.63571 5.87619 6.37224 6.69089 7.01285 7.25367 7.36751 7.51348 7.61286 8.14323 8.91053 Molecular weight = 180.07amu Principal moments of inertia in cm(-1) A = 0.079044 B = 0.013014 C = 0.011218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.147259 B = 2151.040326 C = 2495.339031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.383 3.617 3 N -0.440 5.440 4 C 0.113 3.887 5 N -0.456 5.456 6 C 0.071 3.929 7 C -0.478 4.478 8 H 0.070 0.930 9 C 0.018 3.982 10 N -0.830 5.830 11 Si 0.974 3.026 12 H -0.272 1.272 13 H -0.278 1.278 14 H -0.262 1.262 15 C 0.136 3.864 16 N -0.842 5.842 17 H 0.370 0.630 18 H 0.187 0.813 19 H 0.235 0.765 20 H 0.263 0.737 21 H 0.399 0.601 22 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.876 -7.811 -0.040 9.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C 0.080 3.920 3 N -0.140 5.140 4 C -0.167 4.167 5 N -0.174 5.174 6 C -0.055 4.055 7 C -0.515 4.515 8 H 0.088 0.912 9 C -0.193 4.193 10 N -0.460 5.460 11 Si 0.798 3.202 12 H -0.197 1.197 13 H -0.203 1.203 14 H -0.186 1.186 15 C -0.071 4.071 16 N -0.395 5.395 17 H 0.190 0.810 18 H 0.203 0.797 19 H 0.251 0.749 20 H 0.073 0.927 21 H 0.228 0.772 22 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -4.493 -6.821 -0.040 8.168 hybrid contribution -0.799 -0.436 0.017 0.911 sum -5.292 -7.258 -0.022 8.982 Atomic orbital electron populations 1.68088 1.09103 1.39377 1.22646 1.23663 0.91297 0.88300 0.88694 1.42901 1.07958 1.03481 1.59611 1.25707 0.80456 0.97292 1.13211 1.70809 1.29236 1.01228 1.16127 1.18290 0.85200 0.93348 1.08634 1.18422 0.93375 0.89408 1.50260 0.91189 1.26474 0.94698 1.04169 0.93922 1.70294 0.97993 1.37114 1.40645 0.85334 0.78240 0.78125 0.78529 1.19741 1.20342 1.18620 1.18556 0.87153 0.84560 1.16843 1.40689 1.00841 1.09730 1.88209 0.80982 0.79657 0.74873 0.92720 0.77176 0.76460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.73 11.44 -59.00 -0.68 -22.41 14 2 C 0.38 10.99 12.17 179.61 2.19 13.18 14 3 N -0.44 -17.93 2.96 -355.44 -1.05 -18.98 14 4 C 0.11 4.83 12.47 179.78 2.24 7.07 14 5 N -0.46 -25.56 9.46 -190.56 -1.80 -27.36 14 6 C 0.07 4.14 6.71 39.62 0.27 4.41 14 7 C -0.48 -28.29 9.22 23.21 0.21 -28.08 14 8 H 0.07 3.90 7.36 -2.91 -0.02 3.88 14 9 C 0.02 1.04 5.49 85.10 0.47 1.51 14 10 N -0.83 -50.10 11.94 21.77 0.26 -49.84 14 11 Si 0.97 43.60 29.56 68.60 2.03 45.63 14 12 H -0.27 -11.80 7.11 99.48 0.71 -11.09 14 13 H -0.28 -12.05 7.11 99.48 0.71 -11.34 14 14 H -0.26 -11.23 7.11 99.48 0.71 -10.52 14 15 C 0.14 6.70 8.00 132.34 1.06 7.76 14 16 N -0.84 -35.74 8.98 -52.82 -0.47 -36.22 14 17 H 0.37 7.71 8.91 -92.71 -0.83 6.89 14 18 H 0.19 3.04 8.06 -2.91 -0.02 3.02 14 19 H 0.24 7.13 8.06 -2.91 -0.02 7.11 14 20 H 0.26 14.73 8.30 -92.71 -0.77 13.96 14 21 H 0.40 16.38 8.32 -92.71 -0.77 15.61 14 22 H 0.40 15.31 6.59 -92.70 -0.61 14.69 14 Total: -1.00 -74.92 205.31 3.79 -71.13 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: -0.93 Total: 32.20 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 6.43 Total: 5.85 kcal Atomic # 7 Polarization: -151.07 SS G_CDS: -3.74 Total: -154.81 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -74.92 3.79 -71.13 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238661374.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.029 kcal (2) G-P(sol) polarization free energy of solvation -74.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds