Wall clock time and date at job start Mon Mar 30 2020 01:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52995 * 109.12544 * 180.53734 * 9 7 2 11 11 O 1.42902 * 109.47529 * 299.99680 * 10 9 7 12 12 C 1.49910 * 109.13695 * 61.41226 * 9 7 2 13 13 C 1.29788 * 122.84710 * 220.04090 * 12 9 7 14 14 C 1.49919 * 122.84495 * 359.97438 * 13 12 9 15 15 C 1.49911 * 111.18718 * 19.52756 * 14 13 12 16 16 C 1.29833 * 122.83879 * 340.47553 * 15 14 13 17 17 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 18 18 H 1.09000 * 109.47268 * 60.00416 * 10 9 7 19 19 H 1.09006 * 109.47095 * 179.97438 * 10 9 7 20 20 H 0.96698 * 113.99750 * 179.97438 * 11 10 9 21 21 H 1.08001 * 118.57912 * 40.01507 * 12 9 7 22 22 H 1.07997 * 118.57911 * 179.97438 * 13 12 9 23 23 H 1.08999 * 109.13581 * 259.08410 * 14 13 12 24 24 H 1.09002 * 109.08663 * 139.93384 * 14 13 12 25 25 H 1.08000 * 118.58499 * 160.45803 * 15 14 13 26 26 H 1.07999 * 118.58193 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2519 -3.6561 0.0102 11 8 3.0875 -3.5788 -1.1466 12 6 0.4237 -2.5834 -1.2527 13 6 -0.7817 -3.0645 -1.2669 14 6 -1.4644 -3.5837 -0.0373 15 6 -0.8135 -3.0583 1.2067 16 6 0.3923 -2.5769 1.2209 17 1 -0.4850 0.8401 -0.0004 18 1 2.8671 -3.5924 0.9077 19 1 1.7126 -4.6034 0.0064 20 1 3.7481 -4.2827 -1.2023 21 1 0.8489 -2.2279 -2.1796 22 1 -1.3159 -3.0921 -2.2050 23 1 -1.4149 -4.6726 -0.0339 24 1 -2.5093 -3.2737 -0.0520 25 1 -1.3716 -3.0808 2.1310 26 1 0.7936 -2.2163 2.1564 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238696236.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:53 Heat of formation + Delta-G solvation = -19.838877 kcal Electronic energy + Delta-G solvation = -10967.898582 eV Core-core repulsion = 9012.130822 eV Total energy + Delta-G solvation = -1955.767760 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.96916 -35.30694 -32.60472 -30.06749 -29.90105 -25.07779 -24.70463 -20.55013 -19.82913 -17.06352 -16.15375 -15.02140 -14.57541 -14.22339 -13.64743 -13.22462 -12.56867 -12.31810 -12.13806 -11.61176 -10.96222 -10.89653 -10.55237 -10.32523 -9.60198 -9.33736 -9.05066 -8.77126 -8.54644 -7.87838 -7.41756 -5.88224 -4.00263 3.32320 3.40747 3.45523 3.56150 3.92876 4.48293 5.22489 5.47750 6.00820 6.07735 6.18887 6.29037 6.51724 6.59623 6.71446 6.78271 6.90292 7.01320 7.60631 7.72302 7.93318 8.03428 8.24454 8.30316 8.46733 8.68630 9.02463 9.63529 11.12674 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.039560 B = 0.019689 C = 0.015684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.612902 B = 1421.793146 C = 1784.806424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.065 3.935 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.504 4.504 8 H 0.063 0.937 9 C 0.112 3.888 10 C 0.104 3.896 11 O -0.558 6.558 12 C -0.040 4.040 13 C -0.224 4.224 14 C -0.028 4.028 15 C -0.205 4.205 16 C -0.060 4.060 17 H 0.257 0.743 18 H 0.034 0.966 19 H 0.021 0.979 20 H 0.355 0.645 21 H 0.084 0.916 22 H 0.079 0.921 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.082 0.918 26 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.120 -6.057 0.665 6.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.542 4.542 8 H 0.081 0.919 9 C 0.112 3.888 10 C 0.027 3.973 11 O -0.360 6.360 12 C -0.059 4.059 13 C -0.242 4.242 14 C -0.064 4.064 15 C -0.223 4.223 16 C -0.079 4.079 17 H 0.067 0.933 18 H 0.052 0.948 19 H 0.039 0.961 20 H 0.198 0.802 21 H 0.103 0.897 22 H 0.097 0.903 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.100 0.900 26 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.569 -5.384 0.554 5.442 hybrid contribution 0.523 0.811 0.129 0.974 sum 1.092 -4.573 0.683 4.751 Atomic orbital electron populations 1.70059 1.05544 1.26007 1.49080 1.25032 0.94863 0.99014 0.94962 0.86583 0.80289 0.84045 0.77395 1.19756 1.21157 1.21225 1.20940 0.92725 0.88858 1.51704 0.91926 1.16095 0.90484 0.93244 0.88976 1.22158 0.91704 0.97021 0.86451 1.86681 1.50063 1.53456 1.45759 1.22044 0.94585 0.91043 0.98230 1.21607 0.97430 1.08384 0.96766 1.18770 0.97941 0.97468 0.92266 1.21689 0.97143 1.06536 0.96923 1.22049 0.95491 0.92478 0.97899 0.93262 0.94797 0.96054 0.80157 0.89742 0.90261 0.93072 0.92975 0.90021 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.15 11.53 55.43 0.64 -24.51 15 2 C 0.06 1.81 5.14 -17.82 -0.09 1.71 15 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 15 4 H -0.27 -6.60 7.11 56.52 0.40 -6.19 15 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 15 6 H -0.29 -6.93 7.11 56.52 0.40 -6.52 15 7 C -0.50 -13.98 7.59 -34.44 -0.26 -14.24 15 8 H 0.06 1.76 7.66 -52.49 -0.40 1.36 15 9 C 0.11 2.82 0.49 -158.73 -0.08 2.74 15 10 C 0.10 2.22 5.77 37.16 0.21 2.44 15 11 O -0.56 -11.47 12.80 -35.23 -0.45 -11.92 15 12 C -0.04 -1.02 6.81 -36.07 -0.25 -1.27 15 13 C -0.22 -5.18 9.92 -36.06 -0.36 -5.54 15 14 C -0.03 -0.58 6.27 -29.79 -0.19 -0.77 15 15 C -0.20 -4.58 9.93 -36.08 -0.36 -4.94 15 16 C -0.06 -1.46 7.12 -36.08 -0.26 -1.72 15 17 H 0.26 7.19 8.31 -40.82 -0.34 6.85 15 18 H 0.03 0.68 8.14 -51.93 -0.42 0.26 15 19 H 0.02 0.42 8.14 -51.93 -0.42 0.00 15 20 H 0.36 5.11 9.12 45.56 0.42 5.52 15 21 H 0.08 2.24 8.06 -52.49 -0.42 1.82 15 22 H 0.08 1.70 8.06 -52.49 -0.42 1.28 15 23 H 0.05 0.96 8.14 -51.93 -0.42 0.53 15 24 H 0.05 1.03 8.14 -51.93 -0.42 0.61 15 25 H 0.08 1.66 8.06 -52.49 -0.42 1.24 15 26 H 0.09 2.06 8.06 -52.49 -0.42 1.63 15 LS Contribution 224.12 15.07 3.38 3.38 Total: -1.00 -30.58 224.12 -5.58 -36.16 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -2.50 Total: 1.79 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -1.62 Total: -21.59 kcal Atomic # 7 Polarization: -25.15 SS G_CDS: 0.64 Total: -24.51 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -0.45 Total: -11.92 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -30.58 -5.58 -36.16 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238696236.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.320 kcal (2) G-P(sol) polarization free energy of solvation -30.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds