Wall clock time and date at job start Mon Mar 30 2020 01:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30515 * 1 3 3 Si 1.86800 * 120.00110 * 2 1 4 4 H 1.48492 * 109.47488 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47163 * 300.00484 * 3 2 1 6 6 H 1.48508 * 109.46883 * 59.99936 * 3 2 1 7 7 C 1.40458 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99694 * 180.27773 * 7 2 1 9 9 C 1.41025 * 120.00212 * 359.97438 * 7 2 1 10 10 O 1.21431 * 120.00036 * 0.02562 * 9 7 2 11 11 C 1.50700 * 120.00151 * 180.02562 * 9 7 2 12 12 H 1.09003 * 110.67291 * 31.76544 * 11 9 7 13 13 C 1.54893 * 110.75521 * 268.33386 * 11 9 7 14 14 C 1.54261 * 104.19230 * 203.74360 * 13 11 9 15 15 H 1.09010 * 117.76119 * 163.96666 * 14 13 11 16 16 C 1.53002 * 118.20220 * 319.42293 * 14 13 11 17 17 C 1.53009 * 60.37450 * 93.62294 * 16 14 13 18 18 H 1.08994 * 119.75125 * 111.13161 * 17 16 14 19 19 C 1.54267 * 118.19585 * 266.38556 * 17 16 14 20 20 H 0.97005 * 120.00160 * 359.97438 * 1 2 3 21 21 H 1.08998 * 110.48267 * 322.41724 * 13 11 9 22 22 H 1.09002 * 110.49028 * 85.06216 * 13 11 9 23 23 H 1.09000 * 117.45947 * 346.02521 * 16 14 13 24 24 H 1.08992 * 117.46415 * 201.21521 * 16 14 13 25 25 H 1.09002 * 110.48520 * 281.89087 * 19 17 16 26 26 H 1.09002 * 110.59745 * 159.30674 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 3.6991 1.3464 -0.0006 5 1 1.8804 2.3965 -1.2125 6 1 1.8804 2.3964 1.2126 7 6 2.0074 -1.2164 -0.0005 8 1 3.0875 -1.2164 0.0040 9 6 1.3024 -2.4377 -0.0005 10 8 0.0880 -2.4378 -0.0005 11 6 2.0559 -3.7428 -0.0005 12 1 2.9992 -3.6426 0.5363 13 6 2.2939 -4.2393 -1.4483 14 6 2.4830 -5.7630 -1.2994 15 1 2.4012 -6.3750 -2.1978 16 6 3.3043 -6.2774 -0.1155 17 6 1.7834 -6.1670 0.0101 18 1 1.1789 -7.0717 0.0742 19 6 1.1936 -4.8745 0.6115 20 1 -0.4850 0.8401 0.0004 21 1 1.4278 -4.0216 -2.0734 22 1 3.1912 -3.7824 -1.8657 23 1 3.9077 -5.5522 0.4305 24 1 3.7307 -7.2772 -0.1961 25 1 1.2880 -4.8814 1.6974 26 1 0.1494 -4.7582 0.3210 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250625060.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:34 Heat of formation + Delta-G solvation = -29.736047 kcal Electronic energy + Delta-G solvation = -10637.146104 eV Core-core repulsion = 8680.949171 eV Total energy + Delta-G solvation = -1956.196933 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.16532 -36.21302 -32.61974 -30.49073 -27.59723 -26.81915 -23.30715 -20.42465 -19.10702 -18.17073 -16.55419 -15.61337 -14.74713 -14.22310 -13.11587 -12.87196 -12.59887 -12.31970 -11.85394 -11.41425 -11.09558 -10.87820 -10.70468 -10.40374 -10.06293 -9.90030 -9.87208 -9.56533 -8.98647 -8.88115 -7.30104 -6.17681 -4.84695 3.05781 3.16106 3.21044 4.06424 4.12992 4.28170 5.03687 5.19078 5.43077 5.48539 5.78889 5.90540 6.05616 6.17151 6.26209 6.31634 6.58728 6.63353 6.74265 6.76963 6.93683 6.99814 7.24895 7.30774 8.15152 8.88225 8.97445 10.40297 10.64958 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.078076 B = 0.011450 C = 0.010668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.536950 B = 2444.726247 C = 2624.026391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.083 3.917 3 Si 0.902 3.098 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.068 0.932 9 C 0.372 3.628 10 O -0.545 6.545 11 C -0.135 4.135 12 H 0.069 0.931 13 C -0.073 4.073 14 C -0.169 4.169 15 H 0.101 0.899 16 C -0.160 4.160 17 C -0.168 4.168 18 H 0.100 0.900 19 C -0.081 4.081 20 H 0.271 0.729 21 H 0.070 0.930 22 H 0.061 0.939 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.054 0.946 26 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.419 -5.814 -0.820 7.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.086 0.914 9 C 0.267 3.733 10 O -0.433 6.433 11 C -0.154 4.154 12 H 0.087 0.913 13 C -0.110 4.110 14 C -0.187 4.187 15 H 0.119 0.881 16 C -0.197 4.197 17 C -0.186 4.186 18 H 0.118 0.882 19 C -0.118 4.118 20 H 0.082 0.918 21 H 0.089 0.911 22 H 0.080 0.920 23 H 0.110 0.890 24 H 0.108 0.892 25 H 0.073 0.927 26 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.648 -5.764 -0.824 7.451 hybrid contribution 0.664 0.701 -0.027 0.965 sum 5.312 -5.064 -0.851 7.388 Atomic orbital electron populations 1.69968 1.07500 1.27696 1.31929 1.26027 0.94556 1.00899 0.92524 0.86391 0.80903 0.81596 0.78437 1.18473 1.19931 1.19934 1.20880 0.94847 0.92025 1.48846 0.91383 1.19319 0.88773 0.87318 0.77914 1.90377 1.15629 1.88618 1.48726 1.22672 0.99503 0.98029 0.95233 0.91276 1.21704 1.01074 0.90909 0.97344 1.23199 1.05750 0.97571 0.92189 0.88123 1.22855 0.93666 1.01325 1.01851 1.23216 0.93899 0.99687 1.01758 0.88173 1.21803 1.00583 0.90683 0.98743 0.91774 0.91128 0.91992 0.89021 0.89243 0.92695 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.84 11.72 55.57 0.65 -21.19 15 2 C 0.08 2.28 5.50 -17.28 -0.10 2.18 15 3 Si 0.90 19.75 29.56 -169.99 -5.03 14.73 15 4 H -0.26 -5.54 7.11 56.52 0.40 -5.14 15 5 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 7 C -0.53 -15.09 9.22 -37.69 -0.35 -15.44 15 8 H 0.07 1.79 7.85 -52.48 -0.41 1.38 15 9 C 0.37 10.55 6.08 -33.25 -0.20 10.35 15 10 O -0.54 -17.39 14.35 5.43 0.08 -17.32 15 11 C -0.13 -3.06 2.68 -89.78 -0.24 -3.30 15 12 H 0.07 1.50 7.38 -51.93 -0.38 1.12 15 13 C -0.07 -1.46 6.20 -25.07 -0.16 -1.62 15 14 C -0.17 -2.84 7.06 -89.51 -0.63 -3.47 15 15 H 0.10 1.50 8.14 -51.92 -0.42 1.07 15 16 C -0.16 -2.43 9.83 -26.73 -0.26 -2.69 15 17 C -0.17 -2.85 7.06 -89.50 -0.63 -3.48 15 18 H 0.10 1.52 8.14 -51.93 -0.42 1.10 15 19 C -0.08 -1.68 6.07 -25.08 -0.15 -1.83 15 20 H 0.27 7.15 8.29 -40.82 -0.34 6.81 15 21 H 0.07 1.52 8.04 -51.93 -0.42 1.11 15 22 H 0.06 1.18 8.14 -51.93 -0.42 0.75 15 23 H 0.09 1.43 7.21 -51.93 -0.37 1.06 15 24 H 0.09 1.13 8.14 -51.93 -0.42 0.71 15 25 H 0.05 1.10 8.14 -51.93 -0.42 0.67 15 26 H 0.08 1.90 7.23 -51.93 -0.38 1.53 15 LS Contribution 223.38 15.07 3.37 3.37 Total: -1.00 -31.60 223.38 -6.86 -38.46 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -3.21 Total: 1.25 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -2.72 Total: -19.30 kcal Atomic # 7 Polarization: -21.84 SS G_CDS: 0.65 Total: -21.19 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: 0.08 Total: -17.32 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.03 Total: 14.73 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -31.60 -6.86 -38.46 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250625060.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.729 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds