Wall clock time and date at job start Mon Mar 30 2020 02:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47261 * 2 1 4 4 N 1.32749 * 125.69198 * 270.35192 * 3 2 1 5 5 C 1.32978 * 109.22532 * 180.13801 * 4 3 2 6 6 C 1.40000 * 125.96724 * 179.82872 * 5 4 3 7 7 H 1.08001 * 120.00520 * 173.59368 * 6 5 4 8 8 C 1.40241 * 119.99464 * 353.87040 * 6 5 4 9 9 N 1.30685 * 120.00390 * 6.01852 * 8 6 5 10 10 Si 1.86802 * 119.99794 * 186.01403 * 8 6 5 11 11 H 1.48504 * 109.47156 * 94.98126 * 10 8 6 12 12 H 1.48494 * 109.47519 * 214.98207 * 10 8 6 13 13 H 1.48497 * 109.47105 * 334.98722 * 10 8 6 14 14 N 1.37540 * 108.07344 * 359.56625 * 5 4 3 15 15 H 0.97006 * 126.56092 * 180.22929 * 14 5 4 16 16 C 1.36215 * 125.68627 * 90.00456 * 3 2 1 17 17 C 1.50702 * 126.40453 * 0.03246 * 16 3 2 18 18 H 1.09007 * 109.47021 * 299.99546 * 1 2 3 19 19 H 1.08997 * 109.47122 * 59.99912 * 1 2 3 20 20 H 1.09003 * 109.47156 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46914 * 239.99925 * 2 1 3 22 22 H 1.08998 * 109.47565 * 120.00718 * 2 1 3 23 23 H 0.96998 * 120.00046 * 180.02562 * 9 8 6 24 24 H 1.09001 * 109.46879 * 270.02742 * 17 16 3 25 25 H 1.09002 * 109.47261 * 30.02543 * 17 16 3 26 26 H 1.08999 * 109.47010 * 150.03060 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2843 2.1532 -1.0781 5 6 2.7144 3.3537 -0.7012 6 6 3.0835 4.4002 -1.5548 7 1 3.3213 5.3716 -1.1469 8 6 3.1389 4.1888 -2.9400 9 7 2.7340 3.0532 -3.4445 10 14 3.7914 5.5304 -4.0643 11 1 5.2340 5.2969 -4.3281 12 1 3.0437 5.5083 -5.3471 13 1 3.6153 6.8524 -3.4113 14 7 2.7278 3.3899 0.6736 15 1 2.9932 4.1394 1.2294 16 6 2.2973 2.1699 1.1064 17 6 2.1436 1.7327 2.5404 18 1 -0.3633 0.5138 0.8901 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3634 -1.0277 -0.0005 21 1 1.8933 -0.5139 -0.8900 22 1 1.8934 -0.5139 0.8899 23 1 2.7727 2.9069 -4.4026 24 1 1.1373 1.9690 2.8863 25 1 2.3095 0.6578 2.6123 26 1 2.8727 2.2552 3.1596 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258800678.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:40 Heat of formation + Delta-G solvation = 30.040831 kcal Electronic energy + Delta-G solvation = -10584.388153 eV Core-core repulsion = 8663.076090 eV Total energy + Delta-G solvation = -1921.312062 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.84467 -33.65086 -32.80257 -30.83618 -29.12115 -27.06521 -23.99495 -21.92057 -19.95255 -18.05886 -16.88378 -15.50766 -14.55196 -13.79120 -13.55171 -12.92108 -12.57343 -12.07515 -11.92419 -11.64381 -11.39877 -11.12047 -11.05960 -10.69928 -10.34286 -10.18922 -9.96527 -9.12133 -8.00084 -7.69924 -6.80714 -6.34259 -4.19536 3.08219 3.19049 3.21916 3.67449 4.07926 4.69171 4.91137 5.66255 5.86867 5.92675 6.02345 6.20471 6.22152 6.37211 6.50000 6.57932 6.63126 6.80082 7.01619 7.25808 7.46374 7.77102 8.12792 8.34766 8.67124 9.04553 9.49928 10.31859 10.59338 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.061376 B = 0.012801 C = 0.010946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.094301 B = 2186.870991 C = 2557.301470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.031 4.031 3 C 0.019 3.981 4 N -0.509 5.509 5 C 0.375 3.625 6 C -0.469 4.469 7 H 0.076 0.924 8 C 0.083 3.917 9 N -0.743 5.743 10 Si 0.910 3.090 11 H -0.273 1.273 12 H -0.278 1.278 13 H -0.266 1.266 14 N -0.620 5.620 15 H 0.392 0.608 16 C -0.151 4.151 17 C -0.047 4.047 18 H 0.045 0.955 19 H 0.055 0.945 20 H 0.042 0.958 21 H 0.062 0.938 22 H 0.053 0.947 23 H 0.271 0.729 24 H 0.042 0.958 25 H 0.058 0.942 26 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.798 -1.068 4.813 4.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.069 4.069 3 C -0.115 4.115 4 N -0.231 5.231 5 C 0.130 3.870 6 C -0.508 4.508 7 H 0.095 0.905 8 C -0.140 4.140 9 N -0.368 5.368 10 Si 0.735 3.265 11 H -0.198 1.198 12 H -0.203 1.203 13 H -0.190 1.190 14 N -0.228 5.228 15 H 0.226 0.774 16 C -0.264 4.264 17 C -0.105 4.105 18 H 0.064 0.936 19 H 0.074 0.926 20 H 0.061 0.939 21 H 0.081 0.919 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.978 -1.565 3.820 4.243 hybrid contribution 0.561 1.333 0.605 1.568 sum -0.417 -0.232 4.426 4.451 Atomic orbital electron populations 1.21645 0.96306 0.99690 1.01763 1.19606 0.94586 0.92209 1.00521 1.20413 1.05221 0.96007 0.89882 1.71156 1.24135 1.02340 1.25513 1.20128 0.95152 0.93695 0.77995 1.18087 1.46651 0.95637 0.90460 0.90548 1.25668 0.94062 0.96048 0.98264 1.70024 1.31664 1.22327 1.12808 0.86299 0.79272 0.81416 0.79531 1.19797 1.20342 1.18971 1.43232 1.58798 1.12373 1.08358 0.77428 1.20254 1.21548 0.89580 0.95006 1.19770 0.99447 1.00036 0.91257 0.93559 0.92593 0.93922 0.91931 0.92870 0.91853 0.93901 0.92301 0.94145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.89 37.16 0.37 -2.13 15 2 C -0.03 -0.64 6.27 -27.88 -0.17 -0.81 15 3 C 0.02 0.49 6.33 -82.92 -0.52 -0.04 15 4 N -0.51 -15.01 9.43 -8.95 -0.08 -15.10 15 5 C 0.38 10.70 7.61 -155.61 -1.18 9.52 15 6 C -0.47 -13.05 9.45 -38.17 -0.36 -13.41 15 7 H 0.08 1.96 7.86 -52.49 -0.41 1.55 15 8 C 0.08 2.23 5.49 -17.29 -0.09 2.14 15 9 N -0.74 -21.19 11.92 55.56 0.66 -20.53 15 10 Si 0.91 19.55 29.57 -169.99 -5.03 14.53 15 11 H -0.27 -5.78 7.11 56.52 0.40 -5.38 15 12 H -0.28 -5.86 7.11 56.52 0.40 -5.46 15 13 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 14 N -0.62 -15.17 6.25 -8.21 -0.05 -15.22 15 15 H 0.39 8.21 8.96 -40.82 -0.37 7.85 15 16 C -0.15 -3.55 7.26 -81.28 -0.59 -4.14 15 17 C -0.05 -0.84 10.23 36.01 0.37 -0.47 15 18 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 19 H 0.05 1.13 8.14 -51.93 -0.42 0.71 15 20 H 0.04 0.64 8.14 -51.93 -0.42 0.22 15 21 H 0.06 1.33 8.14 -51.93 -0.42 0.91 15 22 H 0.05 0.96 7.16 -51.93 -0.37 0.59 15 23 H 0.27 7.01 8.29 -40.82 -0.34 6.67 15 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 15 25 H 0.06 0.96 7.17 -51.93 -0.37 0.59 15 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 15 LS Contribution 229.31 15.07 3.46 3.46 Total: -1.00 -31.77 229.31 -6.43 -38.20 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -3.19 Total: 4.00 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -2.19 Total: -9.34 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: 0.53 Total: -50.85 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.03 Total: 14.53 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -31.77 -6.43 -38.20 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258800678.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.241 kcal (2) G-P(sol) polarization free energy of solvation -31.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds