Wall clock time and date at job start Mon Mar 30 2020 02:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47261 * 2 1 4 4 N 1.32749 * 125.69198 * 270.35192 * 3 2 1 5 5 C 1.32978 * 109.22532 * 180.13801 * 4 3 2 6 6 C 1.40000 * 125.96724 * 179.82872 * 5 4 3 7 7 H 1.08001 * 120.00520 * 173.59368 * 6 5 4 8 8 C 1.40241 * 119.99464 * 353.87040 * 6 5 4 9 9 N 1.30685 * 120.00390 * 6.01852 * 8 6 5 10 10 Si 1.86802 * 119.99794 * 186.01403 * 8 6 5 11 11 H 1.48504 * 109.47156 * 94.98126 * 10 8 6 12 12 H 1.48494 * 109.47519 * 214.98207 * 10 8 6 13 13 H 1.48497 * 109.47105 * 334.98722 * 10 8 6 14 14 N 1.37540 * 108.07344 * 359.56625 * 5 4 3 15 15 H 0.97006 * 126.56092 * 180.22929 * 14 5 4 16 16 C 1.36215 * 125.68627 * 90.00456 * 3 2 1 17 17 C 1.50702 * 126.40453 * 0.03246 * 16 3 2 18 18 H 1.09007 * 109.47021 * 299.99546 * 1 2 3 19 19 H 1.08997 * 109.47122 * 59.99912 * 1 2 3 20 20 H 1.09003 * 109.47156 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46914 * 239.99925 * 2 1 3 22 22 H 1.08998 * 109.47565 * 120.00718 * 2 1 3 23 23 H 0.96998 * 120.00046 * 180.02562 * 9 8 6 24 24 H 1.09001 * 109.46879 * 270.02742 * 17 16 3 25 25 H 1.09002 * 109.47261 * 30.02543 * 17 16 3 26 26 H 1.08999 * 109.47010 * 150.03060 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2843 2.1532 -1.0781 5 6 2.7144 3.3537 -0.7012 6 6 3.0835 4.4002 -1.5548 7 1 3.3213 5.3716 -1.1469 8 6 3.1389 4.1888 -2.9400 9 7 2.7340 3.0532 -3.4445 10 14 3.7914 5.5304 -4.0643 11 1 5.2340 5.2969 -4.3281 12 1 3.0437 5.5083 -5.3471 13 1 3.6153 6.8524 -3.4113 14 7 2.7278 3.3899 0.6736 15 1 2.9932 4.1394 1.2294 16 6 2.2973 2.1699 1.1064 17 6 2.1436 1.7327 2.5404 18 1 -0.3633 0.5138 0.8901 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3634 -1.0277 -0.0005 21 1 1.8933 -0.5139 -0.8900 22 1 1.8934 -0.5139 0.8899 23 1 2.7727 2.9069 -4.4026 24 1 1.1373 1.9690 2.8863 25 1 2.3095 0.6578 2.6123 26 1 2.8727 2.2552 3.1596 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258800678.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:40 Heat of formation + Delta-G solvation = 8.906972 kcal Electronic energy + Delta-G solvation = -10585.304585 eV Core-core repulsion = 8663.076090 eV Total energy + Delta-G solvation = -1922.228495 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.78729 -35.54190 -34.59039 -32.68678 -30.88851 -28.96130 -25.73653 -23.64776 -21.95835 -19.95386 -18.81866 -17.47393 -16.35647 -15.53690 -15.26371 -14.55520 -14.34841 -13.78924 -13.46168 -13.16682 -13.05255 -12.86880 -12.74954 -12.51027 -12.02033 -11.86588 -11.67743 -11.06300 -10.00897 -9.70541 -8.76735 -8.32171 -6.24490 1.36737 1.43213 1.58422 1.82093 2.28070 2.72915 3.07689 3.61952 4.25262 4.37666 4.60179 4.63046 4.71079 4.86965 4.96663 5.08424 5.14199 5.20703 5.29115 5.48865 5.59638 5.85221 6.16858 6.35572 6.76013 7.04966 7.55973 8.34485 8.64473 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.061376 B = 0.012801 C = 0.010946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.094301 B = 2186.870991 C = 2557.301470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.028 4.028 3 C -0.027 4.027 4 N -0.554 5.554 5 C 0.335 3.665 6 C -0.501 4.501 7 H 0.087 0.913 8 C 0.031 3.969 9 N -0.793 5.793 10 Si 0.996 3.004 11 H -0.266 1.266 12 H -0.272 1.272 13 H -0.254 1.254 14 N -0.614 5.614 15 H 0.407 0.593 16 C -0.136 4.136 17 C -0.044 4.044 18 H 0.054 0.946 19 H 0.023 0.977 20 H 0.079 0.921 21 H 0.045 0.955 22 H 0.085 0.915 23 H 0.275 0.725 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.705 -0.875 6.137 6.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.067 4.067 3 C -0.159 4.159 4 N -0.277 5.277 5 C 0.088 3.912 6 C -0.541 4.541 7 H 0.105 0.895 8 C -0.187 4.187 9 N -0.419 5.419 10 Si 0.816 3.184 11 H -0.191 1.191 12 H -0.197 1.197 13 H -0.178 1.178 14 N -0.223 5.223 15 H 0.243 0.757 16 C -0.249 4.249 17 C -0.102 4.102 18 H 0.073 0.927 19 H 0.042 0.958 20 H 0.098 0.902 21 H 0.064 0.936 22 H 0.103 0.897 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.098 0.902 26 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.890 -1.376 5.189 5.442 hybrid contribution 0.505 1.207 0.346 1.353 sum -0.385 -0.170 5.535 5.551 Atomic orbital electron populations 1.21561 0.94591 1.01706 1.00552 1.19705 0.96028 0.89751 1.01191 1.21222 1.06780 0.98170 0.89722 1.71049 1.25110 1.03486 1.28104 1.20479 0.96830 0.94187 0.79687 1.18545 1.47769 0.96192 0.91552 0.89505 1.26750 0.93700 0.98681 0.99616 1.70168 1.33389 1.24956 1.13387 0.85016 0.78468 0.78007 0.76911 1.19123 1.19683 1.17770 1.43280 1.58025 1.13406 1.07574 0.75700 1.21189 1.17902 0.88401 0.97403 1.19922 1.01234 1.01510 0.87522 0.92722 0.95758 0.90247 0.93649 0.89682 0.91522 0.91964 0.90222 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 9.89 71.98 0.71 -3.73 15 2 C -0.03 -1.15 6.27 29.85 0.19 -0.96 15 3 C -0.03 -1.36 6.33 41.95 0.27 -1.09 15 4 N -0.55 -33.63 9.43 -182.23 -1.72 -35.35 15 5 C 0.34 19.54 7.61 133.59 1.02 20.56 15 6 C -0.50 -28.51 9.45 23.18 0.22 -28.29 15 7 H 0.09 4.52 7.86 -2.91 -0.02 4.49 15 8 C 0.03 1.71 5.49 85.35 0.47 2.18 15 9 N -0.79 -46.77 11.92 21.88 0.26 -46.51 15 10 Si 1.00 40.61 29.57 68.60 2.03 42.63 15 11 H -0.27 -10.49 7.11 99.48 0.71 -9.78 15 12 H -0.27 -10.68 7.11 99.48 0.71 -9.98 15 13 H -0.25 -9.76 7.11 99.48 0.71 -9.06 15 14 N -0.61 -29.81 6.25 -179.88 -1.13 -30.94 15 15 H 0.41 16.67 8.96 -92.70 -0.83 15.84 15 16 C -0.14 -6.16 7.26 41.38 0.30 -5.86 15 17 C -0.04 -1.40 10.23 71.24 0.73 -0.67 15 18 H 0.05 1.80 8.14 -2.38 -0.02 1.78 15 19 H 0.02 0.97 8.14 -2.39 -0.02 0.95 15 20 H 0.08 2.18 8.14 -2.39 -0.02 2.16 15 21 H 0.04 1.94 8.14 -2.38 -0.02 1.92 15 22 H 0.08 2.83 7.16 -2.39 -0.02 2.81 15 23 H 0.27 14.74 8.29 -92.71 -0.77 13.97 15 24 H 0.06 1.80 8.14 -2.39 -0.02 1.78 15 25 H 0.08 2.23 7.17 -2.39 -0.02 2.22 15 26 H 0.06 1.71 8.14 -2.39 -0.02 1.69 15 Total: -1.00 -70.92 229.31 3.69 -67.23 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.35 Total: 20.79 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: 3.90 Total: -17.86 kcal Atomic # 7 Polarization: -110.21 SS G_CDS: -2.58 Total: -112.79 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.63 kcal Total: -70.92 3.69 -67.23 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258800678.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.132 kcal (2) G-P(sol) polarization free energy of solvation -70.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds