Wall clock time and date at job start Mon Mar 30 2020 02:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86798 * 120.00187 * 2 1 4 4 H 1.48496 * 109.47507 * 270.00015 * 3 2 1 5 5 H 1.48505 * 109.46930 * 29.99989 * 3 2 1 6 6 H 1.48505 * 109.47119 * 149.99627 * 3 2 1 7 7 C 1.37884 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99586 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00083 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.47195 * 304.99876 * 10 9 7 12 12 N 1.46898 * 109.47230 * 65.00180 * 10 9 7 13 13 C 1.50705 * 109.47109 * 184.99774 * 10 9 7 14 14 C 1.40883 * 126.29421 * 280.02941 * 13 10 9 15 15 C 1.34845 * 107.41891 * 179.97438 * 14 13 10 16 16 N 1.36343 * 108.22012 * 359.73178 * 15 14 13 17 17 H 0.96994 * 125.63856 * 180.27121 * 16 15 14 18 18 C 1.34854 * 126.28765 * 99.99906 * 13 10 9 19 19 H 0.96999 * 120.00323 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.47138 * 59.99804 * 9 7 2 21 21 H 1.09003 * 109.47078 * 299.99850 * 9 7 2 22 22 H 1.00896 * 111.00205 * 59.99506 * 12 10 9 23 23 H 1.00896 * 111.00004 * 183.96051 * 12 10 9 24 24 H 1.08010 * 126.28960 * 359.97438 * 14 13 10 25 25 H 1.08002 * 125.89203 * 179.97438 * 15 14 13 26 26 H 1.08002 * 125.89007 * 0.02562 * 18 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 1 3.5865 -3.1758 0.8425 12 7 3.6334 -3.2931 -1.2545 13 6 5.5234 -2.6385 0.1254 14 6 6.4465 -2.4091 -0.9139 15 6 7.6827 -2.4986 -0.3828 16 7 7.5566 -2.7689 0.9476 17 1 8.2890 -2.8810 1.5735 18 6 6.2307 -2.8594 1.2521 19 1 -0.4850 0.8400 0.0004 20 1 3.8744 -0.6801 0.8911 21 1 3.8752 -0.6805 -0.8889 22 1 4.0244 -2.8116 -2.0503 23 1 3.9022 -4.2656 -1.2522 24 1 6.2078 -2.2000 -1.9463 25 1 8.6124 -2.3735 -0.9180 26 1 5.8179 -3.0675 2.2282 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259427431.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:55 Heat of formation + Delta-G solvation = 41.359458 kcal Electronic energy + Delta-G solvation = -10426.977067 eV Core-core repulsion = 8506.155817 eV Total energy + Delta-G solvation = -1920.821250 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.74606 -35.36633 -32.23418 -29.96004 -28.86742 -28.28018 -23.83925 -20.66772 -20.53103 -18.78043 -17.64263 -16.35151 -15.07041 -14.09321 -13.75286 -13.44434 -13.29684 -13.14027 -12.39425 -12.15117 -11.66995 -11.37522 -10.74564 -10.08266 -10.03834 -9.63796 -8.96293 -8.35266 -8.33589 -7.84371 -7.65520 -5.82923 -3.76433 2.55849 3.35026 3.42842 3.49372 3.54558 3.59691 4.62456 5.31512 5.44556 5.51438 5.65828 5.72540 5.99290 6.29535 6.48753 6.66285 6.86879 7.25836 7.33857 7.41782 7.56858 7.82980 7.97721 8.19521 8.37125 8.81901 9.30630 9.80660 11.31231 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.056518 B = 0.011733 C = 0.010693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.300911 B = 2385.904360 C = 2618.004531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.060 3.940 3 Si 0.874 3.126 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.268 1.268 7 C -0.491 4.491 8 H 0.079 0.921 9 C 0.002 3.998 10 C 0.171 3.829 11 H 0.074 0.926 12 N -0.818 5.818 13 C -0.182 4.182 14 C -0.195 4.195 15 C -0.027 4.027 16 N -0.567 5.567 17 H 0.408 0.592 18 C -0.022 4.022 19 H 0.259 0.741 20 H 0.016 0.984 21 H 0.009 0.991 22 H 0.332 0.668 23 H 0.321 0.679 24 H 0.130 0.870 25 H 0.157 0.843 26 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.440 -4.876 0.914 16.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.139 4.139 3 Si 0.702 3.298 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.193 1.193 7 C -0.529 4.529 8 H 0.097 0.903 9 C -0.036 4.036 10 C 0.059 3.941 11 H 0.092 0.908 12 N -0.344 5.344 13 C -0.191 4.191 14 C -0.220 4.220 15 C -0.158 4.158 16 N -0.162 5.162 17 H 0.243 0.757 18 C -0.153 4.153 19 H 0.069 0.931 20 H 0.034 0.966 21 H 0.027 0.973 22 H 0.144 0.856 23 H 0.132 0.868 24 H 0.148 0.852 25 H 0.174 0.826 26 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 14.622 -4.586 1.221 15.372 hybrid contribution 1.873 0.862 0.104 2.064 sum 16.494 -3.724 1.324 16.961 Atomic orbital electron populations 1.69916 1.06139 1.26297 1.52726 1.25011 0.94662 0.98721 0.95512 0.86877 0.80313 0.84342 0.78277 1.20600 1.21725 1.19309 1.21139 0.89173 0.94456 1.48148 0.90255 1.19570 0.97260 0.90726 0.96028 1.19884 0.84319 0.97776 0.92126 0.90835 1.58869 1.66761 1.04838 1.03942 1.21106 0.98454 1.06391 0.93099 1.20771 0.91929 1.09867 0.99447 1.21707 0.99274 1.10681 0.84130 1.41938 1.07519 1.57685 1.09039 0.75673 1.21732 0.82288 1.11161 1.00074 0.93141 0.96602 0.97275 0.85619 0.86808 0.85240 0.82589 0.82227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.21 13.96 55.43 0.77 -28.44 15 2 C 0.06 1.82 5.47 -17.82 -0.10 1.73 15 3 Si 0.87 22.77 27.47 -169.99 -4.67 18.10 15 4 H -0.28 -7.20 7.11 56.52 0.40 -6.79 15 5 H -0.29 -7.49 7.11 56.52 0.40 -7.09 15 6 H -0.27 -6.79 6.54 56.52 0.37 -6.42 15 7 C -0.49 -14.55 9.39 -34.44 -0.32 -14.87 15 8 H 0.08 2.56 7.99 -52.48 -0.42 2.14 15 9 C 0.00 0.05 3.67 -27.88 -0.10 -0.05 15 10 C 0.17 3.57 3.14 -68.86 -0.22 3.35 15 11 H 0.07 1.57 8.14 -51.93 -0.42 1.15 15 12 N -0.82 -16.05 8.86 -5.65 -0.05 -16.10 15 13 C -0.18 -3.24 5.11 -104.82 -0.54 -3.78 15 14 C -0.19 -3.14 10.24 -39.79 -0.41 -3.54 15 15 C -0.03 -0.36 11.94 -16.75 -0.20 -0.56 15 16 N -0.57 -7.01 6.08 -12.85 -0.08 -7.09 15 17 H 0.41 3.49 8.96 -40.82 -0.37 3.12 15 18 C -0.02 -0.34 11.85 -16.75 -0.20 -0.54 15 19 H 0.26 7.80 8.31 -40.82 -0.34 7.46 15 20 H 0.02 0.40 7.20 -51.93 -0.37 0.03 15 21 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 15 22 H 0.33 6.19 8.25 -39.29 -0.32 5.87 15 23 H 0.32 5.41 9.06 -39.29 -0.36 5.06 15 24 H 0.13 1.99 7.73 -52.48 -0.41 1.58 15 25 H 0.16 1.53 8.06 -52.49 -0.42 1.11 15 26 H 0.16 2.12 8.06 -52.49 -0.42 1.70 15 LS Contribution 227.26 15.07 3.42 3.42 Total: -1.00 -33.86 227.26 -5.75 -39.62 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -3.07 Total: 8.75 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -2.08 Total: -18.26 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: 0.65 Total: -51.63 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.67 Total: 18.10 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -33.86 -5.75 -39.62 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259427431.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.977 kcal (2) G-P(sol) polarization free energy of solvation -33.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds