Wall clock time and date at job start Mon Mar 30 2020 02:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86798 * 120.00187 * 2 1 4 4 H 1.48496 * 109.47507 * 270.00015 * 3 2 1 5 5 H 1.48505 * 109.46930 * 29.99989 * 3 2 1 6 6 H 1.48505 * 109.47119 * 149.99627 * 3 2 1 7 7 C 1.37884 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99586 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00083 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.47195 * 304.99876 * 10 9 7 12 12 N 1.46898 * 109.47230 * 65.00180 * 10 9 7 13 13 C 1.50705 * 109.47109 * 184.99774 * 10 9 7 14 14 C 1.40883 * 126.29421 * 280.02941 * 13 10 9 15 15 C 1.34845 * 107.41891 * 179.97438 * 14 13 10 16 16 N 1.36343 * 108.22012 * 359.73178 * 15 14 13 17 17 H 0.96994 * 125.63856 * 180.27121 * 16 15 14 18 18 C 1.34854 * 126.28765 * 99.99906 * 13 10 9 19 19 H 0.96999 * 120.00323 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.47138 * 59.99804 * 9 7 2 21 21 H 1.09003 * 109.47078 * 299.99850 * 9 7 2 22 22 H 1.00896 * 111.00205 * 59.99506 * 12 10 9 23 23 H 1.00896 * 111.00004 * 183.96051 * 12 10 9 24 24 H 1.08010 * 126.28960 * 359.97438 * 14 13 10 25 25 H 1.08002 * 125.89203 * 179.97438 * 15 14 13 26 26 H 1.08002 * 125.89007 * 0.02562 * 18 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 1 3.5865 -3.1758 0.8425 12 7 3.6334 -3.2931 -1.2545 13 6 5.5234 -2.6385 0.1254 14 6 6.4465 -2.4091 -0.9139 15 6 7.6827 -2.4986 -0.3828 16 7 7.5566 -2.7689 0.9476 17 1 8.2890 -2.8810 1.5735 18 6 6.2307 -2.8594 1.2521 19 1 -0.4850 0.8400 0.0004 20 1 3.8744 -0.6801 0.8911 21 1 3.8752 -0.6805 -0.8889 22 1 4.0244 -2.8116 -2.0503 23 1 3.9022 -4.2656 -1.2522 24 1 6.2078 -2.2000 -1.9463 25 1 8.6124 -2.3735 -0.9180 26 1 5.8179 -3.0675 2.2282 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259427431.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:54 Heat of formation + Delta-G solvation = 15.421687 kcal Electronic energy + Delta-G solvation = -10428.101813 eV Core-core repulsion = 8506.155817 eV Total energy + Delta-G solvation = -1921.945996 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.87436 -37.03812 -34.45152 -31.18900 -30.69384 -29.65299 -25.72878 -22.46280 -21.64960 -20.04203 -19.09340 -18.36113 -16.79455 -16.09879 -15.14301 -14.74637 -14.73348 -14.45844 -14.36095 -13.52996 -13.34444 -13.18973 -12.57777 -11.94230 -11.89719 -11.71530 -11.21819 -10.67945 -9.59062 -9.25594 -8.90891 -8.17380 -6.16675 1.37036 1.38331 1.46742 1.50813 2.11179 2.42638 2.63209 3.16412 4.06906 4.33800 4.38239 4.53378 4.66127 4.85887 5.00437 5.22565 5.35243 5.39393 5.68042 5.75900 6.08931 6.26050 6.43989 6.64233 6.89030 6.92142 6.96575 7.44492 9.00170 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.056518 B = 0.011733 C = 0.010693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.300911 B = 2385.904360 C = 2618.004531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.003 4.003 3 Si 0.947 3.053 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.254 1.254 7 C -0.497 4.497 8 H 0.036 0.964 9 C 0.010 3.990 10 C 0.180 3.820 11 H 0.058 0.942 12 N -0.833 5.833 13 C -0.215 4.215 14 C -0.226 4.226 15 C -0.006 4.006 16 N -0.549 5.549 17 H 0.430 0.570 18 C -0.022 4.022 19 H 0.262 0.738 20 H 0.014 0.986 21 H 0.007 0.993 22 H 0.336 0.664 23 H 0.337 0.663 24 H 0.128 0.872 25 H 0.196 0.804 26 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.417 -4.265 1.124 18.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.198 4.198 3 Si 0.772 3.228 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.177 1.177 7 C -0.535 4.535 8 H 0.055 0.945 9 C -0.028 4.028 10 C 0.067 3.933 11 H 0.076 0.924 12 N -0.360 5.360 13 C -0.224 4.224 14 C -0.251 4.251 15 C -0.138 4.138 16 N -0.145 5.145 17 H 0.269 0.731 18 C -0.154 4.154 19 H 0.071 0.929 20 H 0.032 0.968 21 H 0.026 0.974 22 H 0.149 0.851 23 H 0.149 0.851 24 H 0.146 0.854 25 H 0.213 0.787 26 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 17.642 -4.001 1.446 18.147 hybrid contribution 0.934 0.567 0.042 1.094 sum 18.576 -3.434 1.488 18.949 Atomic orbital electron populations 1.70078 1.08115 1.27571 1.54232 1.25956 0.95559 1.03074 0.95187 0.85703 0.79256 0.79019 0.78837 1.19620 1.21043 1.17750 1.21387 0.91684 0.92903 1.47539 0.94540 1.19451 0.93985 0.93860 0.95520 1.19481 0.86902 0.94858 0.92020 0.92415 1.58778 1.67462 1.05964 1.03843 1.20767 0.96622 1.09795 0.95168 1.20911 0.92921 1.11899 0.99405 1.22229 0.99700 1.07706 0.84157 1.41928 1.07182 1.56013 1.09382 0.73118 1.21904 0.83394 1.10104 0.99958 0.92912 0.96804 0.97422 0.85091 0.85087 0.85386 0.78663 0.80777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.93 13.96 21.45 0.30 -62.64 15 2 C 0.00 -0.18 5.47 84.66 0.46 0.29 15 3 Si 0.95 47.04 27.47 68.60 1.88 48.92 15 4 H -0.27 -12.99 7.11 99.48 0.71 -12.28 15 5 H -0.28 -13.74 7.11 99.48 0.71 -13.03 15 6 H -0.25 -11.89 6.54 99.48 0.65 -11.24 15 7 C -0.50 -30.22 9.39 25.60 0.24 -29.98 15 8 H 0.04 2.46 7.99 -2.91 -0.02 2.44 15 9 C 0.01 0.49 3.67 29.85 0.11 0.60 15 10 C 0.18 7.54 3.14 44.17 0.14 7.68 15 11 H 0.06 2.54 8.14 -2.39 -0.02 2.52 15 12 N -0.83 -33.04 8.86 -171.80 -1.52 -34.56 15 13 C -0.21 -7.35 5.11 -19.99 -0.10 -7.46 15 14 C -0.23 -6.79 10.24 22.14 0.23 -6.56 15 15 C -0.01 -0.14 11.94 83.21 0.99 0.85 15 16 N -0.55 -11.39 6.08 -194.56 -1.18 -12.57 15 17 H 0.43 5.37 8.96 -92.71 -0.83 4.54 15 18 C -0.02 -0.60 11.85 83.21 0.99 0.38 15 19 H 0.26 16.08 8.31 -92.71 -0.77 15.31 15 20 H 0.01 0.69 7.20 -2.39 -0.02 0.67 15 21 H 0.01 0.38 7.57 -2.39 -0.02 0.36 15 22 H 0.34 12.62 8.25 -89.70 -0.74 11.88 15 23 H 0.34 11.39 9.06 -89.70 -0.81 10.58 15 24 H 0.13 3.75 7.73 -2.91 -0.02 3.73 15 25 H 0.20 2.76 8.06 -2.91 -0.02 2.74 15 26 H 0.18 4.22 8.06 -2.91 -0.02 4.20 15 Total: -1.00 -73.95 227.26 1.30 -72.65 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: -1.24 Total: 22.39 kcal Atomic # 6 Polarization: -37.26 SS G_CDS: 3.06 Total: -34.20 kcal Atomic # 7 Polarization: -107.36 SS G_CDS: -2.40 Total: -109.76 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 1.88 Total: 48.92 kcal Total: -73.95 1.30 -72.65 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259427431.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.073 kcal (2) G-P(sol) polarization free energy of solvation -73.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds