Wall clock time and date at job start Mon Mar 30 2020 02:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09000 * 109.47017 * 54.99395 * 10 9 7 12 12 N 1.46908 * 109.46833 * 294.99820 * 10 9 7 13 13 C 1.50695 * 109.47310 * 174.99934 * 10 9 7 14 14 C 1.40887 * 126.29007 * 259.99812 * 13 10 9 15 15 C 1.34855 * 107.41918 * 179.97438 * 14 13 10 16 16 N 1.36346 * 108.21425 * 359.97438 * 15 14 13 17 17 H 0.97000 * 125.63430 * 179.97438 * 16 15 14 18 18 C 1.34852 * 126.29214 * 79.68761 * 13 10 9 19 19 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 1.00902 * 111.00072 * 299.99814 * 12 10 9 23 23 H 1.00901 * 110.99845 * 63.95541 * 12 10 9 24 24 H 1.08001 * 126.29548 * 359.97438 * 14 13 10 25 25 H 1.08000 * 125.89443 * 179.97438 * 15 14 13 26 26 H 1.08000 * 125.88941 * 0.02562 * 18 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 1 3.5904 -3.1773 -0.8317 12 7 3.6277 -3.2908 1.2658 13 6 5.5239 -2.6387 -0.1068 14 6 6.2682 -2.8717 -1.2801 15 6 7.5738 -2.7838 -0.9541 16 7 7.6627 -2.5045 0.3775 17 1 8.4862 -2.3882 0.8768 18 6 6.4029 -2.4121 0.8905 19 1 -0.4849 0.8400 0.0004 20 1 3.8786 -0.6821 -0.8838 21 1 3.8711 -0.6785 0.8962 22 1 4.0152 -2.8079 2.0625 23 1 2.6236 -3.3597 1.3379 24 1 5.8670 -3.0820 -2.2605 25 1 8.4055 -2.9125 -1.6309 26 1 6.1521 -2.1966 1.9186 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259427433.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:56 Heat of formation + Delta-G solvation = 36.649873 kcal Electronic energy + Delta-G solvation = -10436.285501 eV Core-core repulsion = 8515.260028 eV Total energy + Delta-G solvation = -1921.025473 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.61169 -35.46518 -32.32723 -30.21010 -28.41840 -28.11647 -24.09864 -21.01850 -20.13467 -18.47046 -17.91383 -16.56418 -14.56680 -14.27671 -13.61601 -13.55394 -13.25696 -12.92190 -12.52269 -11.96991 -11.73536 -11.46851 -10.85896 -10.48595 -10.09889 -9.70927 -9.13998 -8.54893 -8.29541 -7.81887 -7.46005 -6.04638 -4.02659 2.69700 3.31567 3.38501 3.43696 3.51051 3.71341 4.46011 5.28792 5.40006 5.62842 5.74895 5.88590 6.06067 6.41521 6.61658 6.74213 6.86505 7.22998 7.31767 7.51748 7.56445 7.79805 7.97418 8.15609 8.38031 8.53905 8.99655 9.58778 11.08384 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.056638 B = 0.011750 C = 0.010711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.247500 B = 2382.441786 C = 2613.625679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.522 4.522 8 H 0.074 0.926 9 C -0.036 4.036 10 C 0.167 3.833 11 H 0.075 0.925 12 N -0.839 5.839 13 C -0.133 4.133 14 C -0.193 4.193 15 C -0.030 4.030 16 N -0.568 5.568 17 H 0.407 0.593 18 C -0.018 4.018 19 H 0.262 0.738 20 H 0.014 0.986 21 H 0.013 0.987 22 H 0.324 0.676 23 H 0.347 0.653 24 H 0.131 0.869 25 H 0.156 0.844 26 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.786 -3.061 1.029 14.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.192 1.192 7 C -0.560 4.560 8 H 0.092 0.908 9 C -0.075 4.075 10 C 0.055 3.945 11 H 0.093 0.907 12 N -0.367 5.367 13 C -0.139 4.139 14 C -0.219 4.219 15 C -0.161 4.161 16 N -0.163 5.163 17 H 0.243 0.757 18 C -0.148 4.148 19 H 0.072 0.928 20 H 0.033 0.967 21 H 0.031 0.969 22 H 0.134 0.866 23 H 0.161 0.839 24 H 0.149 0.851 25 H 0.174 0.826 26 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 14.133 -3.574 0.820 14.601 hybrid contribution 0.249 2.022 0.345 2.066 sum 14.382 -1.552 1.165 14.512 Atomic orbital electron populations 1.69918 1.06261 1.26850 1.51105 1.25012 0.94670 0.99137 0.94507 0.86773 0.80244 0.83665 0.78530 1.20329 1.21544 1.19185 1.21147 0.89446 0.94430 1.50943 0.90840 1.20287 0.96981 0.93666 0.96590 1.19675 0.87575 0.94680 0.92614 0.90696 1.59206 1.17047 1.56759 1.03668 1.19750 0.95566 1.05650 0.92980 1.20835 0.92326 1.09886 0.98873 1.21672 0.98396 1.11042 0.84960 1.41873 1.07721 1.57804 1.08927 0.75749 1.21497 0.82936 1.11055 0.99295 0.92780 0.96733 0.96908 0.86552 0.83924 0.85083 0.82618 0.82628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.85 13.96 55.43 0.77 -27.08 15 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 15 3 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 15 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 15 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 15 6 H -0.27 -6.56 6.54 56.52 0.37 -6.19 15 7 C -0.52 -14.75 9.10 -34.44 -0.31 -15.07 15 8 H 0.07 2.20 7.39 -52.49 -0.39 1.82 15 9 C -0.04 -0.88 3.67 -27.88 -0.10 -0.99 15 10 C 0.17 3.53 3.22 -68.86 -0.22 3.31 15 11 H 0.07 1.68 8.14 -51.93 -0.42 1.25 15 12 N -0.84 -16.43 9.10 -5.65 -0.05 -16.48 15 13 C -0.13 -2.51 5.14 -104.82 -0.54 -3.05 15 14 C -0.19 -3.30 10.81 -39.78 -0.43 -3.73 15 15 C -0.03 -0.42 11.94 -16.75 -0.20 -0.62 15 16 N -0.57 -7.50 6.07 -12.85 -0.08 -7.58 15 17 H 0.41 3.79 8.96 -40.82 -0.37 3.42 15 18 C -0.02 -0.29 11.31 -16.75 -0.19 -0.48 15 19 H 0.26 7.61 8.31 -40.82 -0.34 7.27 15 20 H 0.01 0.36 7.58 -51.93 -0.39 -0.03 15 21 H 0.01 0.31 7.19 -51.93 -0.37 -0.06 15 22 H 0.32 5.87 8.16 -39.29 -0.32 5.55 15 23 H 0.35 7.13 7.90 -39.29 -0.31 6.82 15 24 H 0.13 2.10 8.06 -52.49 -0.42 1.68 15 25 H 0.16 1.61 8.06 -52.49 -0.42 1.18 15 26 H 0.16 2.27 7.61 -52.49 -0.40 1.87 15 LS Contribution 225.37 15.07 3.40 3.40 Total: -1.00 -31.98 225.37 -5.71 -37.69 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -2.99 Total: 11.25 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -2.09 Total: -18.73 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: 0.64 Total: -51.13 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -31.98 -5.71 -37.69 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259427433.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.338 kcal (2) G-P(sol) polarization free energy of solvation -31.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds