Wall clock time and date at job start Mon Mar 30 2020 02:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 120.00210 * 2 1 4 4 H 1.48495 * 109.47045 * 239.99961 * 3 2 1 5 5 H 1.48499 * 109.46696 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46823 * 119.99739 * 3 2 1 7 7 C 1.37879 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00054 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99856 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47355 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.46829 * 305.00154 * 10 9 7 12 12 N 1.46902 * 109.46851 * 64.99852 * 10 9 7 13 13 C 1.50689 * 109.47484 * 185.00074 * 10 9 7 14 14 C 1.34858 * 125.89060 * 274.95850 * 13 10 9 15 15 C 1.40900 * 107.41627 * 179.80426 * 14 13 10 16 16 C 1.34850 * 107.41621 * 0.37840 * 15 14 13 17 17 N 1.36341 * 125.89234 * 94.99757 * 13 10 9 18 18 H 0.97003 * 125.63345 * 359.97438 * 17 13 10 19 19 H 0.97001 * 119.99501 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47025 * 59.99935 * 9 7 2 21 21 H 1.09002 * 109.47424 * 300.00407 * 9 7 2 22 22 H 1.00893 * 111.00000 * 60.00746 * 12 10 9 23 23 H 1.00897 * 110.99830 * 183.95647 * 12 10 9 24 24 H 1.07991 * 126.29006 * 0.05653 * 14 13 10 25 25 H 1.07999 * 126.29093 * 180.24309 * 15 14 13 26 26 H 1.08002 * 125.89234 * 179.89015 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9294 -3.5552 -0.8424 12 7 3.0083 -3.6539 1.2547 13 6 1.4959 -4.9636 -0.1244 14 6 0.9490 -5.6608 0.8922 15 6 0.3433 -6.8068 0.3399 16 6 0.5505 -6.7706 -0.9921 17 7 1.2546 -5.6398 -1.2834 18 1 1.5372 -5.3624 -2.1689 19 1 -0.4849 0.8401 -0.0004 20 1 0.6240 -2.5566 -0.8903 21 1 0.6246 -2.5571 0.8896 22 1 2.3961 -3.7518 2.0507 23 1 3.7160 -4.3731 1.2523 24 1 0.9678 -5.3884 1.9370 25 1 -0.1872 -7.5745 0.8836 26 1 0.2130 -7.5077 -1.7057 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259669354.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:01 Heat of formation + Delta-G solvation = 34.383765 kcal Electronic energy + Delta-G solvation = -10407.300530 eV Core-core repulsion = 8486.176791 eV Total energy + Delta-G solvation = -1921.123739 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.65973 -35.21887 -32.35769 -30.51495 -28.37605 -27.75340 -24.00055 -21.11303 -20.20622 -19.24804 -17.21454 -15.99615 -15.10615 -14.37306 -13.72716 -13.47114 -13.33091 -12.92412 -12.08418 -11.93739 -11.64609 -11.11218 -10.73351 -10.57801 -10.22192 -9.57632 -9.08654 -8.45560 -8.28832 -8.05149 -7.48837 -5.90077 -3.89663 2.72498 3.40682 3.43564 3.44445 3.48625 3.77480 4.55320 5.37643 5.46928 5.51253 5.62457 5.85924 5.92266 6.24386 6.63065 6.67175 6.79338 7.41985 7.53769 7.56101 7.74684 8.00649 8.01612 8.10214 8.21828 8.53218 9.16478 9.72324 11.21530 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.076573 B = 0.009958 C = 0.009550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.577986 B = 2811.172428 C = 2931.177632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.051 3.949 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.497 4.497 8 H 0.062 0.938 9 C 0.039 3.961 10 C 0.159 3.841 11 H 0.070 0.930 12 N -0.812 5.812 13 C 0.012 3.988 14 C -0.215 4.215 15 C -0.201 4.201 16 C -0.035 4.035 17 N -0.555 5.555 18 H 0.411 0.589 19 H 0.259 0.741 20 H 0.016 0.984 21 H 0.020 0.980 22 H 0.338 0.662 23 H 0.323 0.677 24 H 0.128 0.872 25 H 0.128 0.872 26 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.532 -10.556 -1.305 10.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.149 4.149 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.536 4.536 8 H 0.080 0.920 9 C 0.001 3.999 10 C 0.046 3.954 11 H 0.089 0.911 12 N -0.338 5.338 13 C -0.104 4.104 14 C -0.239 4.239 15 C -0.226 4.226 16 C -0.166 4.166 17 N -0.150 5.150 18 H 0.246 0.754 19 H 0.068 0.932 20 H 0.035 0.965 21 H 0.038 0.962 22 H 0.151 0.849 23 H 0.133 0.867 24 H 0.146 0.854 25 H 0.145 0.855 26 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.648 -9.639 -1.642 10.130 hybrid contribution -0.049 -0.049 -0.266 0.275 sum 2.599 -9.689 -1.908 10.211 Atomic orbital electron populations 1.69971 1.06042 1.26492 1.51739 1.25030 0.94804 0.99202 0.95857 0.86630 0.79442 0.83157 0.78542 1.20482 1.21600 1.20236 1.21135 0.93340 0.90110 1.49012 0.91983 1.19110 0.92817 0.90493 0.97440 1.20362 0.94211 0.88426 0.92440 0.91144 1.58957 1.17458 1.53651 1.03780 1.22331 1.04820 0.97886 0.85387 1.20543 1.07156 0.97921 0.98304 1.20796 1.07363 1.00794 0.93668 1.21686 1.04850 0.92811 0.97222 1.42029 1.44877 1.19179 1.08926 0.75360 0.93164 0.96542 0.96163 0.84873 0.86665 0.85439 0.85454 0.82691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.57 13.29 55.43 0.74 -26.83 15 2 C 0.05 1.48 5.46 -17.82 -0.10 1.38 15 3 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 15 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 15 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 7 C -0.50 -14.13 8.84 -34.44 -0.30 -14.43 15 8 H 0.06 1.74 7.74 -52.49 -0.41 1.34 15 9 C 0.04 1.01 4.60 -27.88 -0.13 0.88 15 10 C 0.16 3.26 3.21 -68.87 -0.22 3.04 15 11 H 0.07 1.44 8.14 -51.93 -0.42 1.02 15 12 N -0.81 -15.34 8.80 -5.66 -0.05 -15.39 15 13 C 0.01 0.22 6.21 -81.79 -0.51 -0.29 15 14 C -0.21 -3.86 10.16 -39.77 -0.40 -4.26 15 15 C -0.20 -3.22 10.86 -39.78 -0.43 -3.66 15 16 C -0.04 -0.52 11.94 -16.75 -0.20 -0.72 15 17 N -0.56 -8.82 6.07 -9.12 -0.06 -8.87 15 18 H 0.41 5.48 8.96 -40.82 -0.37 5.12 15 19 H 0.26 7.52 8.31 -40.82 -0.34 7.18 15 20 H 0.02 0.46 8.14 -51.93 -0.42 0.03 15 21 H 0.02 0.57 8.14 -51.93 -0.42 0.14 15 22 H 0.34 6.22 8.03 -39.30 -0.32 5.90 15 23 H 0.32 5.17 9.06 -39.29 -0.36 4.82 15 24 H 0.13 2.18 7.46 -52.49 -0.39 1.79 15 25 H 0.13 1.74 8.06 -52.49 -0.42 1.32 15 26 H 0.16 1.72 8.06 -52.49 -0.42 1.29 15 LS Contribution 230.41 15.07 3.47 3.47 Total: -1.00 -31.77 230.41 -6.30 -38.07 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -3.08 Total: 10.47 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -2.30 Total: -18.05 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: 0.63 Total: -51.10 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -31.77 -6.30 -38.07 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259669354.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.454 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds