Wall clock time and date at job start Mon Mar 30 2020 02:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 120.00210 * 2 1 4 4 H 1.48495 * 109.47045 * 239.99961 * 3 2 1 5 5 H 1.48499 * 109.46696 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46823 * 119.99739 * 3 2 1 7 7 C 1.37879 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00054 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99856 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47355 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.46829 * 305.00154 * 10 9 7 12 12 N 1.46902 * 109.46851 * 64.99852 * 10 9 7 13 13 C 1.50689 * 109.47484 * 185.00074 * 10 9 7 14 14 C 1.34858 * 125.89060 * 274.95850 * 13 10 9 15 15 C 1.40900 * 107.41627 * 179.80426 * 14 13 10 16 16 C 1.34850 * 107.41621 * 0.37840 * 15 14 13 17 17 N 1.36341 * 125.89234 * 94.99757 * 13 10 9 18 18 H 0.97003 * 125.63345 * 359.97438 * 17 13 10 19 19 H 0.97001 * 119.99501 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47025 * 59.99935 * 9 7 2 21 21 H 1.09002 * 109.47424 * 300.00407 * 9 7 2 22 22 H 1.00893 * 111.00000 * 60.00746 * 12 10 9 23 23 H 1.00897 * 110.99830 * 183.95647 * 12 10 9 24 24 H 1.07991 * 126.29006 * 0.05653 * 14 13 10 25 25 H 1.07999 * 126.29093 * 180.24309 * 15 14 13 26 26 H 1.08002 * 125.89234 * 179.89015 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9294 -3.5552 -0.8424 12 7 3.0083 -3.6539 1.2547 13 6 1.4959 -4.9636 -0.1244 14 6 0.9490 -5.6608 0.8922 15 6 0.3433 -6.8068 0.3399 16 6 0.5505 -6.7706 -0.9921 17 7 1.2546 -5.6398 -1.2834 18 1 1.5372 -5.3624 -2.1689 19 1 -0.4849 0.8401 -0.0004 20 1 0.6240 -2.5566 -0.8903 21 1 0.6246 -2.5571 0.8896 22 1 2.3961 -3.7518 2.0507 23 1 3.7160 -4.3731 1.2523 24 1 0.9678 -5.3884 1.9370 25 1 -0.1872 -7.5745 0.8836 26 1 0.2130 -7.5077 -1.7057 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259669354.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:01 Heat of formation + Delta-G solvation = 11.214219 kcal Electronic energy + Delta-G solvation = -10408.305237 eV Core-core repulsion = 8486.176791 eV Total energy + Delta-G solvation = -1922.128446 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.95440 -36.93820 -34.46848 -31.80323 -30.21554 -29.27462 -25.93428 -22.89173 -21.45090 -20.63093 -18.85806 -17.90587 -16.84335 -16.32124 -15.24857 -14.84080 -14.78813 -14.29446 -14.06939 -13.45458 -13.15895 -13.01199 -12.60333 -12.48366 -12.11958 -11.54091 -11.24510 -10.52192 -9.74389 -9.57679 -8.83692 -8.12230 -6.20118 1.41254 1.44106 1.46693 1.54477 2.13511 2.46453 2.57190 3.20366 3.92592 4.15912 4.36821 4.45914 4.61042 4.81394 4.96340 5.35271 5.39011 5.44476 5.63698 5.84729 6.11570 6.22217 6.31352 6.47863 6.79213 6.83344 6.95022 7.47030 8.99244 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.076573 B = 0.009958 C = 0.009550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.577986 B = 2811.172428 C = 2931.177632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.006 4.006 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.511 4.511 8 H 0.063 0.937 9 C 0.048 3.952 10 C 0.174 3.826 11 H 0.071 0.929 12 N -0.818 5.818 13 C -0.018 4.018 14 C -0.225 4.225 15 C -0.223 4.223 16 C -0.016 4.016 17 N -0.553 5.553 18 H 0.421 0.579 19 H 0.260 0.740 20 H -0.012 1.012 21 H -0.012 1.012 22 H 0.340 0.660 23 H 0.341 0.659 24 H 0.126 0.874 25 H 0.150 0.850 26 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.303 -11.289 -1.809 11.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.203 4.203 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.011 3.989 10 C 0.061 3.939 11 H 0.089 0.911 12 N -0.346 5.346 13 C -0.134 4.134 14 C -0.250 4.250 15 C -0.247 4.247 16 C -0.147 4.147 17 N -0.149 5.149 18 H 0.259 0.741 19 H 0.069 0.931 20 H 0.007 0.993 21 H 0.007 0.993 22 H 0.153 0.847 23 H 0.154 0.846 24 H 0.144 0.856 25 H 0.167 0.833 26 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 3.446 -10.387 -2.156 11.154 hybrid contribution -0.328 0.098 -0.114 0.361 sum 3.119 -10.290 -2.270 10.989 Atomic orbital electron populations 1.70113 1.07783 1.27470 1.52843 1.25953 0.95666 1.03217 0.95425 0.85508 0.78134 0.78334 0.79049 1.19223 1.21278 1.19498 1.21495 0.93557 0.91347 1.48485 0.91841 1.18905 0.93146 0.92414 0.94480 1.19839 0.93110 0.87741 0.93201 0.91113 1.58847 1.17807 1.54812 1.03168 1.21906 1.06782 0.97886 0.86836 1.20781 1.07044 0.98766 0.98372 1.21150 1.08112 1.00918 0.94569 1.22390 1.02283 0.92285 0.97700 1.42085 1.44665 1.19312 1.08808 0.74110 0.93121 0.99332 0.99333 0.84714 0.84576 0.85614 0.83273 0.78479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.52 13.29 21.45 0.28 -58.24 15 2 C -0.01 -0.37 5.46 84.66 0.46 0.09 15 3 Si 0.96 45.45 29.54 68.60 2.03 47.48 15 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 5 H -0.29 -13.29 7.11 99.48 0.71 -12.58 15 6 H -0.27 -12.34 7.11 99.48 0.71 -11.64 15 7 C -0.51 -29.31 8.84 25.60 0.23 -29.09 15 8 H 0.06 3.56 7.74 -2.91 -0.02 3.53 15 9 C 0.05 2.58 4.60 29.85 0.14 2.72 15 10 C 0.17 7.20 3.21 44.17 0.14 7.35 15 11 H 0.07 2.88 8.14 -2.39 -0.02 2.86 15 12 N -0.82 -30.68 8.80 -171.81 -1.51 -32.19 15 13 C -0.02 -0.67 6.21 41.08 0.25 -0.41 15 14 C -0.22 -7.92 10.16 22.14 0.23 -7.69 15 15 C -0.22 -6.66 10.86 22.14 0.24 -6.42 15 16 C -0.02 -0.41 11.94 83.21 0.99 0.58 15 17 N -0.55 -16.60 6.07 -182.77 -1.11 -17.71 15 18 H 0.42 10.53 8.96 -92.71 -0.83 9.70 15 19 H 0.26 15.31 8.31 -92.71 -0.77 14.54 15 20 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 15 21 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 15 22 H 0.34 12.57 8.03 -89.70 -0.72 11.85 15 23 H 0.34 10.61 9.06 -89.70 -0.81 9.79 15 24 H 0.13 4.32 7.46 -2.92 -0.02 4.30 15 25 H 0.15 3.68 8.06 -2.91 -0.02 3.66 15 26 H 0.20 3.42 8.06 -2.91 -0.02 3.40 15 Total: -1.00 -68.03 230.41 1.21 -66.82 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: -1.16 Total: 26.71 kcal Atomic # 6 Polarization: -35.55 SS G_CDS: 2.68 Total: -32.87 kcal Atomic # 7 Polarization: -105.80 SS G_CDS: -2.34 Total: -108.13 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -68.03 1.21 -66.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259669354.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.035 kcal (2) G-P(sol) polarization free energy of solvation -68.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds