Wall clock time and date at job start Mon Mar 30 2020 01:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38350 * 120.86378 * 2 1 4 4 N 1.32371 * 119.32349 * 180.23353 * 3 2 1 5 5 C 1.32582 * 121.22942 * 359.48218 * 4 3 2 6 6 O 1.35455 * 119.04641 * 180.27288 * 5 4 3 7 7 N 1.31901 * 121.90459 * 0.52983 * 5 4 3 8 8 C 1.34042 * 120.52151 * 359.74112 * 7 5 4 9 9 C 1.41534 * 120.62709 * 180.02562 * 8 7 5 10 10 H 1.08008 * 119.99935 * 179.97438 * 9 8 7 11 11 C 1.40108 * 120.00378 * 359.97438 * 9 8 7 12 12 N 1.30674 * 119.99520 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00209 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47132 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47306 * 120.00296 * 13 11 9 16 16 H 1.48498 * 109.46890 * 239.99968 * 13 11 9 17 17 H 1.09005 * 109.47041 * 89.99754 * 1 2 3 18 18 H 1.08993 * 109.47405 * 210.00165 * 1 2 3 19 19 H 1.09004 * 109.46904 * 330.00286 * 1 2 3 20 20 H 1.08002 * 120.33570 * 359.95033 * 3 2 1 21 21 H 0.96702 * 113.99842 * 270.24897 * 6 5 4 22 22 H 0.96999 * 119.99880 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1876 0.0000 4 7 3.5400 1.1520 -0.0047 5 6 4.1967 0.0003 0.0008 6 8 5.5511 0.0155 0.0013 7 7 3.5692 -1.1600 0.0009 8 6 2.2297 -1.2095 0.0005 9 6 1.5542 -2.4532 0.0011 10 1 0.4744 -2.4813 0.0011 11 6 2.2859 -3.6480 0.0016 12 7 3.5922 -3.6140 0.0020 13 14 1.3943 -5.2894 0.0016 14 1 -0.0723 -5.0561 0.0017 15 1 1.7736 -6.0589 -1.2105 16 1 1.7728 -6.0582 1.2144 17 1 -0.3633 0.0000 -1.0277 18 1 -0.3634 -0.8899 0.5138 19 1 -0.3633 0.8901 0.5138 20 1 1.6964 2.1340 -0.0008 21 1 5.9447 0.0197 -0.8820 22 1 4.0989 -4.4411 0.0019 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259783251.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:16 Heat of formation + Delta-G solvation = -29.451519 kcal Electronic energy + Delta-G solvation = -10418.705124 eV Core-core repulsion = 8358.980185 eV Total energy + Delta-G solvation = -2059.724939 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.05524 -38.03678 -35.86909 -33.47954 -33.33951 -28.86613 -27.13660 -24.14947 -22.80064 -20.17749 -19.09795 -17.79248 -16.88647 -16.37747 -15.21161 -14.68279 -14.53475 -14.32852 -13.50266 -13.22257 -12.96839 -12.87106 -12.51433 -12.34037 -11.86166 -11.65797 -11.10713 -10.64281 -9.58927 -9.35857 -8.37693 -6.78563 0.59700 0.96587 1.41855 1.54711 1.59101 2.18807 2.67881 2.92337 3.71310 4.09852 4.47356 4.68401 4.75106 4.86865 5.06250 5.18519 5.33466 5.57537 5.81879 6.04858 6.41559 6.66881 6.85686 7.16303 8.06728 8.31897 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.046279 B = 0.017124 C = 0.012598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.882878 B = 1634.766429 C = 2221.987766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.308 4.308 3 C 0.139 3.861 4 N -0.643 5.643 5 C 0.452 3.548 6 O -0.484 6.484 7 N -0.557 5.557 8 C 0.242 3.758 9 C -0.435 4.435 10 H 0.114 0.886 11 C 0.017 3.983 12 N -0.746 5.746 13 Si 0.996 3.004 14 H -0.243 1.243 15 H -0.266 1.266 16 H -0.269 1.269 17 H 0.061 0.939 18 H 0.059 0.941 19 H 0.072 0.928 20 H 0.173 0.827 21 H 0.409 0.591 22 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.298 -0.577 -1.743 5.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.317 4.317 3 C -0.018 4.018 4 N -0.378 5.378 5 C 0.145 3.855 6 O -0.288 6.288 7 N -0.288 5.288 8 C 0.114 3.886 9 C -0.468 4.468 10 H 0.132 0.868 11 C -0.206 4.206 12 N -0.368 5.368 13 Si 0.815 3.185 14 H -0.166 1.166 15 H -0.191 1.191 16 H -0.194 1.194 17 H 0.080 0.920 18 H 0.077 0.923 19 H 0.091 0.909 20 H 0.190 0.810 21 H 0.267 0.733 22 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.077 -0.661 -1.146 4.286 hybrid contribution -0.394 -0.523 -0.461 0.801 sum -4.471 -1.184 -1.607 4.897 Atomic orbital electron populations 1.20244 0.88661 1.02101 1.01415 1.21712 0.99287 0.94425 1.16233 1.22651 0.88132 0.98038 0.92949 1.67649 1.11113 1.30498 1.28525 1.20736 0.85523 0.85543 0.93733 1.84532 1.13739 1.95868 1.34650 1.68884 1.11187 1.26179 1.22566 1.19103 0.86715 0.94176 0.88606 1.20298 0.95801 0.89173 1.41509 0.86845 1.27281 0.95510 1.05605 0.92231 1.70222 1.08545 1.30737 1.27250 0.84949 0.79890 0.74916 0.78756 1.16575 1.19061 1.19352 0.92009 0.92254 0.90941 0.81018 0.73341 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.36 9.58 71.24 0.68 -1.68 14 2 C -0.31 -14.39 5.98 -19.19 -0.11 -14.51 14 3 C 0.14 6.28 11.00 84.64 0.93 7.21 14 4 N -0.64 -32.83 10.45 -313.60 -3.28 -36.11 14 5 C 0.45 24.59 8.70 180.61 1.57 26.16 14 6 O -0.48 -23.28 13.64 -87.53 -1.19 -24.48 14 7 N -0.56 -32.44 8.07 -307.16 -2.48 -34.92 14 8 C 0.24 13.25 6.58 40.27 0.26 13.51 14 9 C -0.43 -22.19 8.73 23.54 0.21 -21.98 14 10 H 0.11 5.16 6.16 -2.91 -0.02 5.14 14 11 C 0.02 0.86 5.50 85.32 0.47 1.32 14 12 N -0.75 -39.81 11.52 21.85 0.25 -39.56 14 13 Si 1.00 35.70 29.56 68.60 2.03 37.72 14 14 H -0.24 -8.05 7.11 99.48 0.71 -7.34 14 15 H -0.27 -9.23 7.11 99.48 0.71 -8.52 14 16 H -0.27 -9.44 7.11 99.48 0.71 -8.74 14 17 H 0.06 2.01 8.14 -2.38 -0.02 1.99 14 18 H 0.06 2.11 6.46 -2.39 -0.02 2.10 14 19 H 0.07 2.13 8.10 -2.38 -0.02 2.11 14 20 H 0.17 6.16 8.06 -2.91 -0.02 6.13 14 21 H 0.41 15.02 9.06 -74.06 -0.67 14.35 14 22 H 0.28 13.59 8.29 -92.71 -0.77 12.82 14 Total: -1.00 -67.18 204.89 -0.07 -67.25 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.59 Total: 20.05 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 4.01 Total: 10.04 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -5.50 Total: -110.58 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -1.19 Total: -24.48 kcal Atomic # 14 Polarization: 35.70 SS G_CDS: 2.03 Total: 37.72 kcal Total: -67.18 -0.07 -67.25 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259783251.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.801 kcal (2) G-P(sol) polarization free energy of solvation -67.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds