Wall clock time and date at job start Mon Mar 30 2020 02:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46928 * 2 1 4 4 C 1.50708 * 109.46879 * 119.99355 * 2 1 3 5 5 H 1.07997 * 119.99401 * 120.00233 * 4 2 1 6 6 C 1.37876 * 120.00022 * 300.00054 * 4 2 1 7 7 N 1.31510 * 120.00190 * 180.02562 * 6 4 2 8 8 Si 1.86808 * 120.00075 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.46979 * 89.99729 * 8 6 4 10 10 H 1.48498 * 109.47012 * 209.99762 * 8 6 4 11 11 H 1.48494 * 109.46909 * 329.99709 * 8 6 4 12 12 C 1.50692 * 109.47577 * 239.99615 * 2 1 3 13 13 N 1.30501 * 125.64779 * 300.02499 * 12 2 1 14 14 C 1.34134 * 109.25535 * 179.97438 * 13 12 2 15 15 C 1.34668 * 108.01972 * 0.02562 * 14 13 12 16 16 N 1.35044 * 125.65329 * 120.02483 * 12 2 1 17 17 C 1.46498 * 126.39523 * 359.97438 * 16 12 2 18 18 H 1.09000 * 109.47403 * 60.00770 * 1 2 3 19 19 H 1.09002 * 109.46928 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47577 * 300.00614 * 1 2 3 21 21 H 0.96992 * 120.00811 * 180.02562 * 7 6 4 22 22 H 1.08001 * 125.98356 * 179.97438 * 14 13 12 23 23 H 1.08003 * 126.59021 * 180.02562 * 15 14 13 24 24 H 1.09000 * 109.47175 * 269.97755 * 17 16 12 25 25 H 1.09000 * 109.46887 * 29.98127 * 17 16 12 26 26 H 1.08998 * 109.47088 * 149.97524 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2391 2.4828 7 7 2.1379 -0.8586 3.5567 8 14 0.6246 1.2793 2.6540 9 1 -0.8030 0.8729 2.6996 10 1 0.9756 1.9955 3.9067 11 1 0.8469 2.1766 1.4919 12 6 2.0324 -0.7104 -1.2303 13 7 1.7857 -1.9526 -1.5453 14 6 2.3928 -2.2437 -2.7054 15 6 3.0408 -1.1402 -3.1249 16 7 2.8125 -0.1672 -2.1895 17 6 3.3190 1.2070 -2.2232 18 1 -0.3634 0.5137 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5139 0.8898 21 1 1.9033 -0.5275 4.4376 22 1 2.3672 -3.1964 -3.2135 23 1 3.6273 -1.0416 -4.0264 24 1 2.6059 1.8443 -2.7462 25 1 3.4518 1.5703 -1.2041 26 1 4.2761 1.2288 -2.7443 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259783367.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:30 Heat of formation + Delta-G solvation = 39.275280 kcal Electronic energy + Delta-G solvation = -10751.809255 eV Core-core repulsion = 8830.897628 eV Total energy + Delta-G solvation = -1920.911627 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.81973 -36.37043 -34.74998 -33.54596 -29.58399 -27.69281 -27.14034 -24.04969 -22.05711 -20.26551 -18.67569 -17.91668 -16.76515 -16.26122 -15.54882 -14.97521 -14.49735 -14.22471 -14.06188 -13.71037 -13.43514 -13.06888 -12.87664 -12.45502 -11.97401 -11.37842 -11.28836 -10.76916 -10.64356 -10.38534 -9.07843 -8.28348 -6.34640 1.29866 1.34795 1.38111 1.50119 2.11919 2.33113 2.40833 3.05225 3.84405 4.06376 4.10258 4.43427 4.47107 4.61370 4.69588 4.73497 4.80541 4.87130 5.02958 5.43504 5.52026 5.65704 6.06614 6.22334 6.49148 6.71016 7.27874 7.46940 8.89312 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.056083 B = 0.014393 C = 0.013493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.139666 B = 1944.862210 C = 2074.613111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.090 3.910 3 H 0.055 0.945 4 C -0.507 4.507 5 H 0.019 0.981 6 C 0.010 3.990 7 N -0.951 5.951 8 Si 0.956 3.044 9 H -0.267 1.267 10 H -0.294 1.294 11 H -0.233 1.233 12 C 0.224 3.776 13 N -0.538 5.538 14 C -0.070 4.070 15 C -0.060 4.060 16 N -0.467 5.467 17 C 0.063 3.937 18 H 0.060 0.940 19 H 0.044 0.956 20 H 0.045 0.955 21 H 0.268 0.732 22 H 0.182 0.818 23 H 0.216 0.784 24 H 0.096 0.904 25 H 0.079 0.921 26 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.507 7.703 -13.182 15.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.069 3.931 3 H 0.073 0.927 4 C -0.546 4.546 5 H 0.037 0.963 6 C -0.187 4.187 7 N -0.591 5.591 8 Si 0.781 3.219 9 H -0.193 1.193 10 H -0.222 1.222 11 H -0.156 1.156 12 C -0.039 4.039 13 N -0.257 5.257 14 C -0.218 4.218 15 C -0.192 4.192 16 N -0.150 5.150 17 C -0.078 4.078 18 H 0.079 0.921 19 H 0.063 0.937 20 H 0.063 0.937 21 H 0.077 0.923 22 H 0.199 0.801 23 H 0.232 0.768 24 H 0.114 0.886 25 H 0.098 0.902 26 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.120 7.309 -12.581 14.551 hybrid contribution 0.247 0.410 0.203 0.519 sum 0.367 7.719 -12.379 14.593 Atomic orbital electron populations 1.21964 0.96038 1.01225 0.99861 1.17645 0.93498 0.94846 0.87079 0.92691 1.20942 1.31401 1.12068 0.90197 0.96259 1.25950 0.97254 1.00640 0.94837 1.70051 1.47565 1.42725 0.98711 0.85747 0.78799 0.79275 0.78044 1.19277 1.22175 1.15646 1.23458 0.96518 0.90381 0.93543 1.70174 1.26391 1.13491 1.15617 1.22797 1.02993 1.00714 0.95282 1.23175 1.08419 0.89063 0.98585 1.45671 1.38388 1.12873 1.18038 1.22325 1.01986 0.78515 1.04944 0.92065 0.93668 0.93699 0.92311 0.80059 0.76782 0.88598 0.90220 0.86845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.86 8.65 71.98 0.62 -5.24 15 2 C 0.09 4.32 2.22 -12.29 -0.03 4.29 15 3 H 0.06 2.41 5.78 -2.39 -0.01 2.40 15 4 C -0.51 -30.37 9.13 25.60 0.23 -30.14 15 5 H 0.02 1.33 7.98 -2.91 -0.02 1.31 15 6 C 0.01 0.59 5.45 84.65 0.46 1.05 15 7 N -0.95 -60.83 13.96 21.45 0.30 -60.53 15 8 Si 0.96 43.86 24.37 68.60 1.67 45.53 15 9 H -0.27 -11.79 6.87 99.48 0.68 -11.10 15 10 H -0.29 -13.33 7.11 99.48 0.71 -12.62 15 11 H -0.23 -9.32 6.53 99.48 0.65 -8.67 15 12 C 0.22 10.19 6.35 138.12 0.88 11.07 15 13 N -0.54 -25.92 11.25 -188.13 -2.12 -28.03 15 14 C -0.07 -2.64 11.87 83.52 0.99 -1.65 15 15 C -0.06 -1.82 11.58 83.09 0.96 -0.86 15 16 N -0.47 -16.25 3.15 -537.62 -1.69 -17.95 15 17 C 0.06 1.50 10.83 127.77 1.38 2.88 15 18 H 0.06 2.25 8.14 -2.39 -0.02 2.23 15 19 H 0.04 2.14 8.14 -2.39 -0.02 2.12 15 20 H 0.04 1.94 3.27 -2.39 -0.01 1.93 15 21 H 0.27 15.88 8.31 -92.71 -0.77 15.11 15 22 H 0.18 5.54 8.06 -2.91 -0.02 5.52 15 23 H 0.22 4.12 8.06 -2.91 -0.02 4.10 15 24 H 0.10 1.77 8.14 -2.39 -0.02 1.75 15 25 H 0.08 2.08 7.04 -2.39 -0.02 2.06 15 26 H 0.11 1.87 8.14 -2.39 -0.02 1.85 15 Total: -1.00 -76.34 220.39 4.75 -71.59 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 1.08 Total: 7.98 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: 5.50 Total: -18.59 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -3.51 Total: -106.51 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.67 Total: 45.53 kcal Total: -76.34 4.75 -71.59 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259783367.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.870 kcal (2) G-P(sol) polarization free energy of solvation -76.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds