Wall clock time and date at job start Mon Mar 30 2020 02:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.35062 * 127.22769 * 264.68573 * 4 3 2 6 6 N 1.35897 * 107.38092 * 179.85050 * 5 4 3 7 7 H 0.96998 * 124.86446 * 180.16608 * 6 5 4 8 8 N 1.28470 * 110.27743 * 0.43393 * 6 5 4 9 9 C 1.32763 * 109.92969 * 359.73379 * 8 6 5 10 10 C 1.41427 * 126.56865 * 179.97438 * 9 8 6 11 11 H 1.07998 * 120.00163 * 180.02562 * 10 9 8 12 12 C 1.39854 * 119.99976 * 0.02562 * 10 9 8 13 13 N 1.30898 * 120.00050 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00031 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47328 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47280 * 120.00064 * 14 12 10 17 17 H 1.48506 * 109.46950 * 239.99680 * 14 12 10 18 18 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 19 19 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 21 21 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 22 22 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 23 23 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 24 24 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 25 25 H 1.08000 * 126.31042 * 359.97438 * 5 4 3 26 26 H 0.97002 * 119.99722 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3637 1.5421 1.0718 6 7 5.6421 1.4959 0.6132 7 1 6.4336 1.5448 1.1718 8 7 5.6523 1.3837 -0.6665 9 6 4.4079 1.3435 -1.1272 10 6 4.0137 1.2255 -2.4803 11 1 2.9650 1.2034 -2.7373 12 6 4.9820 1.1374 -3.4856 13 7 6.2531 1.1646 -3.1742 14 14 4.4614 0.9822 -5.2729 15 1 2.9788 0.9752 -5.3578 16 1 4.9965 2.1317 -6.0460 17 1 4.9950 -0.2842 -5.8357 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 1.8933 -0.5139 -0.8900 22 1 1.8932 -0.5139 0.8899 23 1 1.6767 1.9563 0.8900 24 1 1.6767 1.9563 -0.8900 25 1 4.0572 1.6386 2.1029 26 1 6.9246 1.1031 -3.8714 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259786992.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:32 Heat of formation + Delta-G solvation = 47.547065 kcal Electronic energy + Delta-G solvation = -10540.699220 eV Core-core repulsion = 8620.146284 eV Total energy + Delta-G solvation = -1920.552935 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.24744 -34.45535 -33.14816 -30.12625 -28.90067 -25.67198 -25.15591 -20.98131 -20.17005 -18.41369 -16.59890 -16.11518 -14.54178 -14.25581 -13.45308 -13.10854 -12.87216 -12.29219 -12.22529 -11.40488 -11.06409 -10.68241 -10.57901 -10.54383 -10.26597 -10.00080 -9.62491 -9.14886 -8.25395 -7.38608 -7.20700 -6.18183 -4.03091 3.20225 3.30134 3.34997 3.64774 4.27665 4.49415 4.76089 5.65662 5.66345 5.84370 5.85861 6.10105 6.23141 6.39961 6.53141 6.58545 6.82647 6.86230 7.08829 7.30687 7.55220 7.63367 7.96106 8.53453 8.95704 9.13173 9.41312 10.40755 10.80581 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.034421 B = 0.016407 C = 0.011512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.266926 B = 1706.158984 C = 2431.664039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.018 4.018 4 C -0.258 4.258 5 C -0.048 4.048 6 N -0.444 5.444 7 H 0.416 0.584 8 N -0.333 5.333 9 C 0.196 3.804 10 C -0.446 4.446 11 H 0.077 0.923 12 C 0.071 3.929 13 N -0.786 5.786 14 Si 0.900 3.100 15 H -0.265 1.265 16 H -0.279 1.279 17 H -0.279 1.279 18 H 0.051 0.949 19 H 0.044 0.956 20 H 0.046 0.954 21 H 0.066 0.934 22 H 0.050 0.950 23 H 0.043 0.957 24 H 0.059 0.941 25 H 0.139 0.861 26 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.768 -0.650 4.537 7.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.057 4.057 4 C -0.272 4.272 5 C -0.194 4.194 6 N -0.150 5.150 7 H 0.255 0.745 8 N -0.166 5.166 9 C 0.046 3.954 10 C -0.485 4.485 11 H 0.095 0.905 12 C -0.146 4.146 13 N -0.415 5.415 14 Si 0.726 3.274 15 H -0.189 1.189 16 H -0.205 1.205 17 H -0.205 1.205 18 H 0.070 0.930 19 H 0.064 0.936 20 H 0.065 0.935 21 H 0.085 0.915 22 H 0.069 0.931 23 H 0.061 0.939 24 H 0.078 0.922 25 H 0.156 0.844 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.421 -0.685 4.151 6.103 hybrid contribution -0.567 -0.028 -0.204 0.603 sum -4.988 -0.713 3.947 6.401 Atomic orbital electron populations 1.21802 0.97245 1.00545 1.01100 1.21498 0.93751 0.98247 1.01974 1.19512 0.91041 0.95112 0.99999 1.20230 0.94814 1.18440 0.93676 1.22179 0.86661 1.12511 0.98078 1.43494 1.05452 1.59124 1.06916 0.74521 1.74688 1.22526 1.30504 0.88838 1.19235 0.86562 0.96318 0.93296 1.18520 0.93491 1.48230 0.88263 0.90456 1.25742 0.94688 0.94057 1.00131 1.69993 1.00315 1.37857 1.33327 0.86410 0.79605 0.77967 0.83467 1.18866 1.20513 1.20521 0.92984 0.93640 0.93524 0.91499 0.93121 0.93867 0.92220 0.84384 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 37.15 0.37 -1.79 15 2 C -0.12 -2.10 5.92 -26.74 -0.16 -2.26 15 3 C -0.02 -0.36 5.59 -27.88 -0.16 -0.51 15 4 C -0.26 -6.23 5.51 -104.22 -0.57 -6.81 15 5 C -0.05 -1.05 11.97 -16.88 -0.20 -1.25 15 6 N -0.44 -10.32 6.86 30.58 0.21 -10.11 15 7 H 0.42 7.87 8.96 -190.44 -1.71 6.16 15 8 N -0.33 -9.49 10.50 32.34 0.34 -9.15 15 9 C 0.20 5.59 6.78 -84.72 -0.57 5.01 15 10 C -0.45 -12.79 9.26 -37.76 -0.35 -13.14 15 11 H 0.08 2.10 7.75 -52.49 -0.41 1.70 15 12 C 0.07 1.98 5.49 -17.34 -0.10 1.89 15 13 N -0.79 -23.07 11.97 55.54 0.67 -22.40 15 14 Si 0.90 20.54 29.56 -169.99 -5.02 15.52 15 15 H -0.26 -5.87 7.11 56.52 0.40 -5.47 15 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 18 H 0.05 0.74 8.14 -51.93 -0.42 0.31 15 19 H 0.04 0.59 8.14 -51.93 -0.42 0.17 15 20 H 0.05 0.61 8.14 -51.93 -0.42 0.18 15 21 H 0.07 1.34 8.14 -51.93 -0.42 0.92 15 22 H 0.05 0.89 8.14 -51.93 -0.42 0.46 15 23 H 0.04 0.76 8.14 -51.93 -0.42 0.34 15 24 H 0.06 1.22 8.05 -51.93 -0.42 0.81 15 25 H 0.14 2.41 8.06 -52.49 -0.42 1.99 15 26 H 0.26 7.16 8.30 -40.82 -0.34 6.82 15 LS Contribution 230.61 15.07 3.48 3.48 Total: -1.00 -32.23 230.61 -6.70 -38.93 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -4.63 Total: 2.61 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: -1.74 Total: -18.87 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 1.21 Total: -41.66 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -32.23 -6.70 -38.93 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259786992.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.475 kcal (2) G-P(sol) polarization free energy of solvation -32.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds