Wall clock time and date at job start Mon Mar 30 2020 02:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46989 * 2 1 4 4 H 1.09001 * 109.47123 * 305.67905 * 3 2 1 5 5 C 1.50694 * 109.47037 * 185.66981 * 3 2 1 6 6 H 1.07998 * 120.00542 * 275.19171 * 5 3 2 7 7 C 1.37883 * 119.99479 * 95.19226 * 5 3 2 8 8 N 1.31514 * 119.99589 * 184.51988 * 7 5 3 9 9 Si 1.86791 * 120.00220 * 4.52128 * 7 5 3 10 10 H 1.48501 * 109.47552 * 84.89101 * 9 7 5 11 11 H 1.48502 * 109.47372 * 204.89197 * 9 7 5 12 12 H 1.48504 * 109.47016 * 324.89074 * 9 7 5 13 13 C 1.50701 * 109.46757 * 65.67377 * 3 2 1 14 14 N 1.30501 * 125.65215 * 264.68763 * 13 3 2 15 15 C 1.34128 * 109.25527 * 179.89549 * 14 13 3 16 16 C 1.34669 * 108.02275 * 0.37028 * 15 14 13 17 17 N 1.35054 * 125.64993 * 85.00082 * 13 3 2 18 18 H 0.96994 * 126.39432 * 359.94226 * 17 13 3 19 19 H 1.08998 * 109.46986 * 59.99974 * 1 2 3 20 20 H 1.08993 * 109.46753 * 299.99607 * 1 2 3 21 21 H 1.09007 * 109.46712 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47231 * 120.00517 * 2 1 3 23 23 H 1.09002 * 109.46808 * 240.00252 * 2 1 3 24 24 H 0.97006 * 119.99536 * 180.02562 * 8 7 5 25 25 H 1.08000 * 125.98864 * 180.11696 * 15 14 13 26 26 H 1.07999 * 126.58815 * 179.80863 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5960 1.9848 -0.8348 5 6 3.5404 1.4448 -0.1404 6 1 4.1648 1.3304 0.7334 7 6 4.1161 1.5931 -1.3845 8 7 5.4214 1.5062 -1.5195 9 14 3.0422 1.9172 -2.8780 10 1 2.7697 3.3731 -2.9853 11 1 3.7434 1.4534 -4.1021 12 1 1.7594 1.1829 -2.7340 13 6 1.6556 2.1111 1.2947 14 7 0.5981 2.8521 1.4834 15 6 0.5770 3.2770 2.7554 16 6 1.6670 2.7873 3.3765 17 7 2.3516 2.0477 2.4503 18 1 3.1815 1.5674 2.5967 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3632 0.5137 0.8900 21 1 -0.3633 -1.0278 -0.0005 22 1 1.8934 -0.5139 0.8899 23 1 1.8934 -0.5138 -0.8900 24 1 5.8265 1.6109 -2.3947 25 1 -0.1793 3.9055 3.2021 26 1 1.9468 2.9471 4.4073 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259787751.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:21 Heat of formation + Delta-G solvation = 18.733648 kcal Electronic energy + Delta-G solvation = -10743.625907 eV Core-core repulsion = 8821.823529 eV Total energy + Delta-G solvation = -1921.802379 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.74174 -36.80609 -34.12945 -33.17092 -30.70266 -28.83132 -24.96193 -23.00441 -21.99818 -20.95449 -18.95127 -18.55134 -16.50308 -15.91469 -15.40333 -14.78636 -14.74522 -14.33529 -14.04232 -13.69932 -13.38169 -12.78209 -12.32073 -12.04551 -11.76287 -11.55302 -11.22420 -10.81489 -10.78601 -10.74383 -9.05464 -8.34677 -6.40165 1.33758 1.38796 1.41825 1.48478 2.32533 2.38734 2.57326 3.03807 3.83078 4.38923 4.40640 4.47329 4.59565 4.70468 4.76967 4.98626 5.17998 5.30470 5.32018 5.46501 5.51915 5.64223 6.01959 6.20842 6.62895 6.70691 7.26642 7.41678 8.80303 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.044407 B = 0.016079 C = 0.014090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.382718 B = 1740.952312 C = 1986.766705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 C 0.089 3.911 4 H 0.047 0.953 5 C -0.520 4.520 6 H 0.050 0.950 7 C 0.026 3.974 8 N -0.937 5.937 9 Si 0.928 3.072 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.241 1.241 13 C 0.235 3.765 14 N -0.541 5.541 15 C -0.061 4.061 16 C -0.066 4.066 17 N -0.558 5.558 18 H 0.423 0.577 19 H 0.046 0.954 20 H 0.046 0.954 21 H 0.065 0.935 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.268 0.732 25 H 0.188 0.812 26 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.718 -0.647 6.137 9.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 C 0.068 3.932 4 H 0.065 0.935 5 C -0.558 4.558 6 H 0.068 0.932 7 C -0.173 4.173 8 N -0.576 5.576 9 Si 0.753 3.247 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.165 1.165 13 C -0.030 4.030 14 N -0.262 5.262 15 C -0.208 4.208 16 C -0.200 4.200 17 N -0.160 5.160 18 H 0.262 0.738 19 H 0.065 0.935 20 H 0.065 0.935 21 H 0.084 0.916 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.205 0.795 26 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -8.196 -0.423 5.443 9.848 hybrid contribution 1.098 -0.044 -0.047 1.099 sum -7.098 -0.467 5.396 8.929 Atomic orbital electron populations 1.21757 0.95541 1.01325 1.01338 1.21651 0.95282 0.96410 1.01160 1.17750 0.94631 0.92917 0.87904 0.93465 1.21024 0.90014 1.50400 0.94386 0.93198 1.25724 0.95894 0.93972 1.01717 1.69997 1.11469 1.50927 1.25236 0.86000 0.80412 0.79335 0.78980 1.20126 1.20818 1.16473 1.23642 0.89394 0.99548 0.90375 1.70229 1.21199 1.15499 1.19275 1.22784 1.00944 1.06332 0.90753 1.23270 0.96748 1.02253 0.97722 1.43355 1.22489 1.39933 1.10191 0.73805 0.93527 0.93495 0.91568 0.92925 0.92496 0.92264 0.79490 0.77262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.01 9.73 71.98 0.70 -4.31 15 2 C -0.11 -4.32 5.37 30.60 0.16 -4.15 15 3 C 0.09 4.13 1.90 -12.29 -0.02 4.11 15 4 H 0.05 2.31 5.30 -2.39 -0.01 2.30 15 5 C -0.52 -27.86 8.70 25.60 0.22 -27.64 15 6 H 0.05 2.82 7.10 -2.91 -0.02 2.80 15 7 C 0.03 1.45 5.47 84.66 0.46 1.91 15 8 N -0.94 -55.91 13.96 21.45 0.30 -55.61 15 9 Si 0.93 43.47 26.98 68.60 1.85 45.32 15 10 H -0.28 -12.95 7.11 99.48 0.71 -12.24 15 11 H -0.28 -12.88 7.11 99.48 0.71 -12.18 15 12 H -0.24 -10.51 6.83 99.48 0.68 -9.84 15 13 C 0.24 10.23 6.00 138.12 0.83 11.06 15 14 N -0.54 -23.04 10.84 -188.12 -2.04 -25.08 15 15 C -0.06 -2.07 11.87 83.52 0.99 -1.08 15 16 C -0.07 -2.01 12.04 83.09 1.00 -1.01 15 17 N -0.56 -20.65 5.89 -186.26 -1.10 -21.74 15 18 H 0.42 14.69 8.03 -92.71 -0.74 13.95 15 19 H 0.05 1.64 8.14 -2.39 -0.02 1.62 15 20 H 0.05 1.71 7.07 -2.39 -0.02 1.70 15 21 H 0.07 1.94 8.14 -2.38 -0.02 1.93 15 22 H 0.05 2.06 8.14 -2.39 -0.02 2.04 15 23 H 0.06 2.35 8.14 -2.39 -0.02 2.33 15 24 H 0.27 15.08 8.31 -92.70 -0.77 14.31 15 25 H 0.19 4.97 8.06 -2.91 -0.02 4.94 15 26 H 0.21 4.24 8.06 -2.91 -0.02 4.22 15 Total: -1.00 -64.12 224.27 3.76 -60.36 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.40 Total: 17.86 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: 4.35 Total: -21.12 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -2.84 Total: -102.43 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.85 Total: 45.32 kcal Total: -64.12 3.76 -60.36 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259787751.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.094 kcal (2) G-P(sol) polarization free energy of solvation -64.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds