Wall clock time and date at job start Mon Mar 30 2020 01:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47001 * 2 1 4 4 C 1.50707 * 109.47306 * 180.02562 * 3 2 1 5 5 C 1.35666 * 126.32385 * 269.99964 * 4 3 2 6 6 O 1.34235 * 109.21317 * 179.72604 * 5 4 3 7 7 C 1.35085 * 109.39079 * 0.44501 * 6 5 4 8 8 C 1.39748 * 126.20667 * 179.81990 * 7 6 5 9 9 H 1.07998 * 120.00183 * 187.95612 * 8 7 6 10 10 C 1.40159 * 120.00020 * 7.96546 * 8 7 6 11 11 N 1.30809 * 120.00183 * 191.86523 * 10 8 7 12 12 Si 1.86800 * 119.99923 * 11.86152 * 10 8 7 13 13 H 1.48500 * 109.47286 * 270.00379 * 12 10 8 14 14 H 1.48497 * 109.47302 * 30.00404 * 12 10 8 15 15 H 1.48505 * 109.47180 * 150.00124 * 12 10 8 16 16 C 1.39549 * 107.58998 * 359.56551 * 7 6 5 17 17 H 1.08999 * 109.47322 * 179.97438 * 1 2 3 18 18 H 1.09006 * 109.47097 * 300.00389 * 1 2 3 19 19 H 1.08999 * 109.47273 * 60.00105 * 1 2 3 20 20 H 1.09000 * 109.47188 * 240.00067 * 2 1 3 21 21 H 1.08999 * 109.47273 * 119.99895 * 2 1 3 22 22 H 1.08998 * 109.47699 * 59.99568 * 3 2 1 23 23 H 1.09004 * 109.47159 * 299.99336 * 3 2 1 24 24 H 1.08005 * 125.38863 * 0.02562 * 5 4 3 25 25 H 0.96996 * 119.99850 * 354.72946 * 11 10 8 26 26 H 1.08001 * 126.77646 * 180.26547 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.3511 1.4424 1.0921 6 8 5.6338 1.4365 0.6966 7 6 5.6871 1.4426 -0.6532 8 6 6.8463 1.4428 -1.4336 9 1 6.7774 1.5773 -2.5030 10 6 8.0985 1.2681 -0.8286 11 7 9.1916 1.4970 -1.5096 12 14 8.2063 0.7085 0.9503 13 1 8.2176 1.8953 1.8428 14 1 7.0331 -0.1427 1.2735 15 1 9.4539 -0.0722 1.1489 16 6 4.3745 1.4427 -1.1270 17 1 -0.3634 -1.0276 -0.0005 18 1 -0.3633 0.5139 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 1.8933 -0.5138 -0.8900 21 1 1.8933 -0.5138 0.8900 22 1 1.6766 1.9564 0.8899 23 1 1.6767 1.9563 -0.8901 24 1 4.0126 1.4419 2.1177 25 1 9.1385 1.7132 -2.4537 26 1 4.0600 1.4428 -2.1602 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259800763.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:26 Heat of formation + Delta-G solvation = -30.768298 kcal Electronic energy + Delta-G solvation = -10404.797134 eV Core-core repulsion = 8448.555439 eV Total energy + Delta-G solvation = -1956.241695 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.64094 -35.03587 -33.69313 -31.22476 -29.40686 -26.18142 -24.22791 -21.36655 -19.65900 -19.51478 -17.50822 -15.83587 -14.63158 -14.54515 -13.83474 -13.69321 -13.12938 -12.63599 -12.30954 -12.06450 -11.33176 -11.04944 -10.90845 -10.81670 -10.56399 -10.10796 -9.95304 -9.55840 -9.31566 -8.13898 -7.46904 -7.25065 -4.50667 3.04196 3.26054 3.46272 3.62110 3.97560 4.08892 4.86298 5.16511 5.34313 5.40902 5.50980 5.85264 6.09757 6.15329 6.21714 6.36411 6.45104 6.50588 6.71642 7.09286 7.32672 7.43991 7.53745 7.92869 8.10909 8.42461 8.54087 8.98583 9.98848 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.079223 B = 0.011070 C = 0.010271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 353.347622 B = 2528.743918 C = 2725.525809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.044 4.044 4 C -0.125 4.125 5 C -0.183 4.183 6 O -0.209 6.209 7 C 0.184 3.816 8 C -0.499 4.499 9 H 0.096 0.904 10 C 0.043 3.957 11 N -0.814 5.814 12 Si 1.075 2.925 13 H -0.273 1.273 14 H -0.258 1.258 15 H -0.286 1.286 16 C -0.386 4.386 17 H 0.049 0.951 18 H 0.050 0.950 19 H 0.050 0.950 20 H 0.061 0.939 21 H 0.059 0.941 22 H 0.055 0.945 23 H 0.058 0.942 24 H 0.166 0.834 25 H 0.286 0.714 26 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.860 -1.933 3.809 9.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.081 4.081 4 C -0.126 4.126 5 C -0.247 4.247 6 O -0.110 6.110 7 C 0.133 3.867 8 C -0.528 4.528 9 H 0.114 0.886 10 C -0.177 4.177 11 N -0.438 5.438 12 Si 0.901 3.099 13 H -0.199 1.199 14 H -0.183 1.183 15 H -0.213 1.213 16 C -0.406 4.406 17 H 0.068 0.932 18 H 0.069 0.931 19 H 0.070 0.930 20 H 0.080 0.920 21 H 0.078 0.922 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.183 0.817 25 H 0.097 0.903 26 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.534 -2.208 5.143 9.385 hybrid contribution -1.230 0.437 -1.604 2.068 sum -8.764 -1.771 3.539 9.616 Atomic orbital electron populations 1.21804 0.96656 1.00976 1.01350 1.21483 0.94352 0.97388 1.02253 1.19890 0.91487 0.95899 1.00851 1.19745 0.94194 1.04882 0.93802 1.22824 0.81008 1.23254 0.97571 1.83936 1.27941 1.75926 1.23239 1.19802 0.95138 0.93046 0.78757 1.19730 0.89853 1.47410 0.95855 0.88618 1.27341 0.91246 0.90857 1.08217 1.70554 1.30836 1.31156 1.11252 0.83418 0.75991 0.78609 0.71894 1.19907 1.18319 1.21345 1.21029 0.91476 1.31232 0.96906 0.93219 0.93091 0.93042 0.91986 0.92243 0.92594 0.92280 0.81723 0.90267 0.87051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 37.16 0.37 -1.49 15 2 C -0.12 -1.84 5.92 -26.73 -0.16 -2.00 15 3 C -0.04 -0.78 5.72 -27.88 -0.16 -0.94 15 4 C -0.12 -2.86 5.38 -104.97 -0.57 -3.43 15 5 C -0.18 -4.28 11.99 29.81 0.36 -3.92 15 6 O -0.21 -5.54 6.10 3.69 0.02 -5.52 15 7 C 0.18 5.10 6.45 -38.53 -0.25 4.85 15 8 C -0.50 -14.14 9.73 -38.30 -0.37 -14.51 15 9 H 0.10 2.74 8.06 -52.49 -0.42 2.31 15 10 C 0.04 1.18 5.52 -17.27 -0.10 1.09 15 11 N -0.81 -22.34 13.65 55.56 0.76 -21.58 15 12 Si 1.08 25.52 26.43 -169.99 -4.49 21.02 15 13 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 14 H -0.26 -6.15 6.34 56.52 0.36 -5.80 15 15 H -0.29 -6.44 7.11 56.52 0.40 -6.03 15 16 C -0.39 -10.01 10.89 -38.52 -0.42 -10.43 15 17 H 0.05 0.55 8.14 -51.93 -0.42 0.13 15 18 H 0.05 0.58 8.14 -51.93 -0.42 0.15 15 19 H 0.05 0.60 8.14 -51.93 -0.42 0.18 15 20 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 21 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 22 H 0.06 0.90 8.14 -51.93 -0.42 0.47 15 23 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 24 H 0.17 3.20 8.06 -52.48 -0.42 2.78 15 25 H 0.29 7.56 8.73 -40.82 -0.36 7.21 15 26 H 0.11 2.79 8.06 -52.49 -0.42 2.36 15 LS Contribution 228.14 15.07 3.44 3.44 Total: -1.00 -28.87 228.14 -4.99 -33.86 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -3.42 Total: -0.45 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: -1.29 Total: -30.77 kcal Atomic # 7 Polarization: -22.34 SS G_CDS: 0.76 Total: -21.58 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: 0.02 Total: -5.52 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -4.49 Total: 21.02 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -28.87 -4.99 -33.86 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259800763.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.093 kcal (2) G-P(sol) polarization free energy of solvation -28.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds