Wall clock time and date at job start Mon Mar 30 2020 02:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.46967 * 2 1 4 4 C 1.35072 * 126.48079 * 90.03050 * 3 2 1 5 5 C 1.50699 * 125.18034 * 359.97438 * 4 3 2 6 6 N 1.31018 * 109.64282 * 179.97438 * 4 3 2 7 7 C 1.33019 * 109.98030 * 0.02562 * 6 4 3 8 8 C 1.38434 * 126.48442 * 269.71401 * 3 2 1 9 9 C 1.40060 * 127.05928 * 0.02562 * 8 3 2 10 10 H 1.08002 * 120.00334 * 359.97438 * 9 8 3 11 11 C 1.40074 * 119.99805 * 180.02562 * 9 8 3 12 12 N 1.30857 * 119.99920 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00066 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47030 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47728 * 119.99701 * 13 11 9 16 16 H 1.48503 * 109.47029 * 239.99874 * 13 11 9 17 17 H 1.09002 * 109.47106 * 179.97438 * 1 2 3 18 18 H 1.09011 * 109.46854 * 299.99834 * 1 2 3 19 19 H 1.09005 * 109.47366 * 59.99260 * 1 2 3 20 20 H 1.08994 * 109.46812 * 240.00499 * 2 1 3 21 21 H 1.08997 * 109.47178 * 120.00121 * 2 1 3 22 22 H 1.09001 * 109.47037 * 90.00264 * 5 4 3 23 23 H 1.09004 * 109.47079 * 210.00101 * 5 4 3 24 24 H 1.08993 * 109.47322 * 330.00224 * 5 4 3 25 25 H 1.08006 * 126.26573 * 180.02562 * 7 6 4 26 26 H 0.96999 * 119.99752 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2865 2.1382 1.0861 5 6 2.1287 1.6911 2.5165 6 7 2.7048 3.3204 0.7065 7 6 2.7283 3.3895 -0.6216 8 6 2.2979 2.1555 -1.1130 9 6 2.1715 1.7793 -2.4562 10 1 1.8227 0.7890 -2.7092 11 6 2.4985 2.6873 -3.4715 12 7 2.9216 3.8870 -3.1650 13 14 2.3293 2.1859 -5.2630 14 1 1.8344 0.7880 -5.3411 15 1 1.3671 3.0908 -5.9416 16 1 3.6525 2.2802 -5.9304 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3633 0.5139 0.8901 19 1 -0.3634 0.5140 -0.8899 20 1 1.8932 -0.5137 -0.8900 21 1 1.8933 -0.5138 0.8899 22 1 3.0594 1.2405 2.8611 23 1 1.8881 2.5512 3.1416 24 1 1.3244 0.9584 2.5815 25 1 3.0302 4.2421 -1.2118 26 1 3.1477 4.5159 -3.8681 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259906666.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:02 Heat of formation + Delta-G solvation = 36.521095 kcal Electronic energy + Delta-G solvation = -10744.818425 eV Core-core repulsion = 8823.787368 eV Total energy + Delta-G solvation = -1921.031057 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.91789 -33.75016 -33.56156 -30.26597 -28.90709 -27.15116 -23.50001 -22.66926 -19.83239 -18.14570 -16.91639 -15.45649 -14.48604 -14.09072 -13.82467 -12.83601 -12.52563 -12.27052 -12.10765 -11.60231 -11.42075 -11.37581 -11.03525 -10.82134 -10.63765 -10.48848 -10.06069 -9.33595 -8.11408 -8.01526 -6.77552 -6.57185 -4.16061 2.97199 3.10674 3.15058 3.71723 3.94953 4.37292 4.77305 5.42191 5.44583 5.76176 5.78712 5.92371 5.98476 6.14604 6.29495 6.34611 6.51261 6.65004 7.09264 7.21092 7.72271 7.92688 8.06467 8.56996 8.95569 9.11210 9.20471 10.07410 10.38603 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.052692 B = 0.014981 C = 0.012102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.261056 B = 1868.589974 C = 2313.135077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.121 3.879 3 N -0.491 5.491 4 C 0.067 3.933 5 C -0.039 4.039 6 N -0.483 5.483 7 C -0.134 4.134 8 C 0.176 3.824 9 C -0.442 4.442 10 H 0.069 0.931 11 C 0.071 3.929 12 N -0.803 5.803 13 Si 0.923 3.077 14 H -0.265 1.265 15 H -0.274 1.274 16 H -0.274 1.274 17 H 0.058 0.942 18 H 0.054 0.946 19 H 0.063 0.937 20 H 0.076 0.924 21 H 0.068 0.932 22 H 0.049 0.951 23 H 0.066 0.934 24 H 0.049 0.951 25 H 0.184 0.816 26 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.932 -6.416 1.551 7.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.004 4.004 3 N -0.185 5.185 4 C -0.185 4.185 5 C -0.097 4.097 6 N -0.203 5.203 7 C -0.282 4.282 8 C 0.065 3.935 9 C -0.478 4.478 10 H 0.088 0.912 11 C -0.145 4.145 12 N -0.431 5.431 13 Si 0.748 3.252 14 H -0.189 1.189 15 H -0.200 1.200 16 H -0.200 1.200 17 H 0.077 0.923 18 H 0.073 0.927 19 H 0.082 0.918 20 H 0.095 0.905 21 H 0.086 0.914 22 H 0.068 0.932 23 H 0.084 0.916 24 H 0.068 0.932 25 H 0.201 0.799 26 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.668 -5.674 2.050 6.597 hybrid contribution -0.330 -0.928 -1.462 1.763 sum -2.998 -6.603 0.589 7.275 Atomic orbital electron populations 1.22128 0.96145 1.01128 1.02826 1.21235 0.94200 0.82905 1.02035 1.44955 1.55479 1.11107 1.06984 1.22056 1.16553 0.90538 0.89352 1.19694 0.99908 1.00121 0.90019 1.69430 1.17495 1.17722 1.15624 1.23379 1.17477 0.99582 0.87811 1.19031 0.97688 0.90464 0.86361 1.18371 1.41327 0.99866 0.88232 0.91230 1.25650 0.93434 0.94212 1.01235 1.69635 1.33779 1.05170 1.34494 0.86022 0.78534 0.79392 0.81222 1.18903 1.19989 1.19990 0.92310 0.92736 0.91789 0.90520 0.91404 0.93195 0.91553 0.93237 0.79940 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 10.24 37.16 0.38 -2.34 15 2 C 0.12 2.29 6.27 -4.04 -0.03 2.26 15 3 N -0.49 -12.09 2.79 -110.98 -0.31 -12.40 15 4 C 0.07 1.68 7.87 -154.96 -1.22 0.46 15 5 C -0.04 -0.72 9.96 36.01 0.36 -0.37 15 6 N -0.48 -13.71 11.18 -9.76 -0.11 -13.82 15 7 C -0.13 -3.98 10.88 -16.52 -0.18 -4.16 15 8 C 0.18 4.96 6.74 -83.68 -0.56 4.39 15 9 C -0.44 -11.99 9.05 -38.21 -0.35 -12.33 15 10 H 0.07 1.77 7.30 -52.49 -0.38 1.39 15 11 C 0.07 1.83 5.50 -17.28 -0.09 1.73 15 12 N -0.80 -21.59 10.35 55.56 0.57 -21.01 15 13 Si 0.92 19.19 29.56 -169.99 -5.03 14.16 15 14 H -0.27 -5.39 7.11 56.52 0.40 -4.98 15 15 H -0.27 -5.61 7.11 56.52 0.40 -5.21 15 16 H -0.27 -5.62 7.11 56.52 0.40 -5.21 15 17 H 0.06 0.77 8.14 -51.93 -0.42 0.34 15 18 H 0.05 0.90 8.14 -51.92 -0.42 0.48 15 19 H 0.06 1.19 8.14 -51.93 -0.42 0.76 15 20 H 0.08 1.44 7.49 -51.93 -0.39 1.05 15 21 H 0.07 1.11 7.62 -51.93 -0.40 0.71 15 22 H 0.05 0.86 8.14 -51.93 -0.42 0.43 15 23 H 0.07 1.19 8.14 -51.93 -0.42 0.76 15 24 H 0.05 0.80 7.66 -51.93 -0.40 0.40 15 25 H 0.18 5.60 5.78 -52.48 -0.30 5.30 15 26 H 0.28 6.74 8.30 -40.82 -0.34 6.40 15 LS Contribution 226.56 15.07 3.41 3.41 Total: -1.00 -31.12 226.56 -6.26 -37.38 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -3.12 Total: 2.62 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -1.69 Total: -10.35 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 0.16 Total: -47.23 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -31.12 -6.26 -37.38 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259906666.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.900 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds