Wall clock time and date at job start Mon Mar 30 2020 02:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47151 * 2 1 4 4 N 1.36514 * 125.64763 * 264.69267 * 3 2 1 5 5 H 0.97007 * 125.68367 * 0.02878 * 4 3 2 6 6 C 1.38021 * 108.62562 * 179.87183 * 4 3 2 7 7 C 1.39909 * 126.16489 * 180.13145 * 6 4 3 8 8 H 1.08008 * 120.00100 * 162.00568 * 7 6 4 9 9 C 1.40012 * 120.00083 * 342.00054 * 7 6 4 10 10 N 1.30892 * 119.99823 * 167.62123 * 9 7 6 11 11 Si 1.86790 * 120.00123 * 347.62945 * 9 7 6 12 12 H 1.48500 * 109.47558 * 87.83565 * 11 9 7 13 13 H 1.48497 * 109.47446 * 207.84006 * 11 9 7 14 14 H 1.48499 * 109.46978 * 327.83626 * 11 9 7 15 15 C 1.39657 * 107.66641 * 0.38987 * 6 4 3 16 16 C 1.37671 * 125.63952 * 85.00384 * 3 2 1 17 17 N 1.40373 * 126.09763 * 359.97438 * 16 3 2 18 18 H 1.08994 * 109.47077 * 59.99413 * 1 2 3 19 19 H 1.08995 * 109.47420 * 180.02562 * 1 2 3 20 20 H 1.09003 * 109.46708 * 299.99777 * 1 2 3 21 21 H 1.09004 * 109.47106 * 120.00572 * 2 1 3 22 22 H 1.09003 * 109.46708 * 240.00223 * 2 1 3 23 23 H 0.96999 * 120.00205 * 179.97438 * 10 9 7 24 24 H 1.08001 * 126.40431 * 179.72250 * 15 6 4 25 25 H 0.97004 * 119.99966 * 359.97438 * 17 16 3 26 26 H 0.97002 * 119.99867 * 180.02562 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3943 2.1367 -1.1046 5 1 2.3706 1.8157 -2.0197 6 6 2.7963 3.3944 -0.7025 7 6 3.2394 4.4257 -1.5376 8 1 3.2539 5.4438 -1.1773 9 6 3.6643 4.1381 -2.8403 10 7 3.8470 5.1093 -3.6986 11 14 3.9701 2.3683 -3.3536 12 1 2.7047 1.7714 -3.8514 13 1 4.9908 2.3348 -4.4317 14 1 4.4580 1.5915 -2.1858 15 6 2.6865 3.4499 0.6886 16 6 2.2079 2.2096 1.1146 17 7 1.9514 1.8337 2.4425 18 1 -0.3633 0.5139 -0.8899 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.8934 -0.5139 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 4.1417 4.9101 -4.6010 24 1 2.9275 4.2942 1.3174 25 1 1.6178 0.9442 2.6390 26 1 2.1069 2.4637 3.1636 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259906695.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:48 Heat of formation + Delta-G solvation = 25.654846 kcal Electronic energy + Delta-G solvation = -10658.489351 eV Core-core repulsion = 8736.987098 eV Total energy + Delta-G solvation = -1921.502253 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.33505 -34.03264 -32.77476 -32.44664 -28.53117 -27.72418 -24.43039 -21.67667 -19.67063 -18.44411 -17.62418 -15.96066 -15.15167 -14.13403 -13.91494 -13.20578 -13.15638 -13.01637 -12.39856 -11.60594 -11.43331 -11.13972 -10.92675 -10.66391 -10.37794 -10.17748 -9.86222 -9.60531 -9.20605 -6.98926 -6.82758 -6.07843 -4.16201 2.82225 3.04029 3.11590 3.61903 3.88317 4.35480 4.65420 5.19220 5.36200 5.65970 5.71779 6.00128 6.27460 6.41157 6.52853 6.71675 6.91907 7.12030 7.39215 7.53839 7.91271 8.14709 8.46446 8.49344 8.88308 9.03745 9.07355 9.31163 10.24624 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.050268 B = 0.015929 C = 0.013103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.882424 B = 1757.418679 C = 2136.483007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.023 4.023 3 C -0.172 4.172 4 N -0.590 5.590 5 H 0.385 0.615 6 C 0.240 3.760 7 C -0.447 4.447 8 H 0.103 0.897 9 C 0.081 3.919 10 N -0.825 5.825 11 Si 0.878 3.122 12 H -0.271 1.271 13 H -0.281 1.281 14 H -0.243 1.243 15 C -0.365 4.365 16 C 0.164 3.836 17 N -0.886 5.886 18 H 0.048 0.952 19 H 0.040 0.960 20 H 0.053 0.947 21 H 0.056 0.944 22 H 0.045 0.955 23 H 0.282 0.718 24 H 0.109 0.891 25 H 0.380 0.620 26 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.874 -7.989 4.004 9.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.062 4.062 3 C -0.280 4.280 4 N -0.201 5.201 5 H 0.225 0.775 6 C 0.126 3.874 7 C -0.483 4.483 8 H 0.120 0.880 9 C -0.135 4.135 10 N -0.453 5.453 11 Si 0.705 3.295 12 H -0.198 1.198 13 H -0.207 1.207 14 H -0.167 1.167 15 C -0.391 4.391 16 C 0.059 3.941 17 N -0.430 5.430 18 H 0.067 0.933 19 H 0.059 0.941 20 H 0.072 0.928 21 H 0.075 0.925 22 H 0.064 0.936 23 H 0.092 0.908 24 H 0.127 0.873 25 H 0.205 0.795 26 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -2.799 -7.934 3.596 9.150 hybrid contribution 0.117 -0.917 -0.527 1.065 sum -2.682 -8.852 3.068 9.745 Atomic orbital electron populations 1.21818 0.96838 0.99568 1.01914 1.19488 0.94245 0.92198 1.00221 1.18994 1.27129 0.95693 0.86139 1.42142 1.58467 1.13346 1.06172 0.77540 1.17985 0.94152 0.82832 0.92417 1.18564 1.38949 0.95359 0.95386 0.87959 1.25923 0.93114 0.98568 0.95918 1.69639 1.36630 1.33787 1.05240 0.86924 0.78972 0.84079 0.79535 1.19776 1.20709 1.16699 1.20160 1.28174 0.98063 0.92705 1.16766 1.00628 0.93739 0.82973 1.41498 1.80547 1.16792 1.04208 0.93288 0.94069 0.92833 0.92510 0.93620 0.90791 0.87288 0.79459 0.78858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.90 37.16 0.37 -1.92 15 2 C -0.02 -0.42 6.24 -27.88 -0.17 -0.59 15 3 C -0.17 -3.91 6.49 -80.72 -0.52 -4.43 15 4 N -0.59 -14.60 4.66 -6.25 -0.03 -14.63 15 5 H 0.39 9.11 4.38 -40.82 -0.18 8.94 15 6 C 0.24 6.42 6.18 -83.92 -0.52 5.91 15 7 C -0.45 -12.59 9.86 -38.29 -0.38 -12.96 15 8 H 0.10 3.00 8.06 -52.48 -0.42 2.58 15 9 C 0.08 2.17 5.52 -17.29 -0.10 2.08 15 10 N -0.82 -22.61 13.93 55.55 0.77 -21.83 15 11 Si 0.88 20.14 24.69 -169.99 -4.20 15.94 15 12 H -0.27 -5.89 6.81 56.52 0.38 -5.50 15 13 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 14 H -0.24 -5.75 6.76 56.52 0.38 -5.37 15 15 C -0.37 -9.28 10.89 -38.54 -0.42 -9.70 15 16 C 0.16 3.73 7.25 -83.64 -0.61 3.12 15 17 N -0.89 -15.74 9.17 32.45 0.30 -15.44 15 18 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 19 H 0.04 0.54 8.14 -51.93 -0.42 0.12 15 20 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 21 H 0.06 0.93 7.80 -51.93 -0.40 0.52 15 22 H 0.05 0.80 8.14 -51.93 -0.42 0.37 15 23 H 0.28 7.02 8.30 -40.82 -0.34 6.68 15 24 H 0.11 2.66 8.06 -52.49 -0.42 2.24 15 25 H 0.38 5.82 8.36 -40.82 -0.34 5.48 15 26 H 0.39 6.10 8.96 -40.82 -0.37 5.74 15 LS Contribution 221.92 15.07 3.34 3.34 Total: -1.00 -29.16 221.92 -5.16 -34.31 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -3.00 Total: 16.81 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: -2.35 Total: -18.50 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 1.04 Total: -51.91 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.20 Total: 15.94 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -29.16 -5.16 -34.31 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259906695.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.970 kcal (2) G-P(sol) polarization free energy of solvation -29.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds