Wall clock time and date at job start Mon Mar 30 2020 01:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47311 * 2 1 4 4 C 1.50693 * 109.47241 * 180.02562 * 3 2 1 5 5 C 1.39767 * 126.76806 * 265.30324 * 4 3 2 6 6 C 1.35672 * 107.34604 * 180.12405 * 5 4 3 7 7 O 1.34236 * 109.21649 * 359.61502 * 6 5 4 8 8 C 1.35088 * 109.39016 * 0.24320 * 7 6 5 9 9 C 1.39747 * 126.20836 * 179.97438 * 8 7 6 10 10 H 1.08005 * 120.00141 * 174.23263 * 9 8 7 11 11 C 1.40161 * 120.00101 * 354.23866 * 9 8 7 12 12 N 1.30807 * 119.99397 * 6.04270 * 11 9 8 13 13 Si 1.86794 * 120.00207 * 186.04798 * 11 9 8 14 14 H 1.48496 * 109.47463 * 94.97900 * 13 11 9 15 15 H 1.48508 * 109.47032 * 214.98049 * 13 11 9 16 16 H 1.48497 * 109.47085 * 334.97561 * 13 11 9 17 17 H 1.09001 * 109.47228 * 299.99974 * 1 2 3 18 18 H 1.09010 * 109.46805 * 59.99890 * 1 2 3 19 19 H 1.08994 * 109.47213 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47228 * 240.00026 * 2 1 3 21 21 H 1.08993 * 109.46990 * 120.00080 * 2 1 3 22 22 H 1.09001 * 109.46954 * 59.99858 * 3 2 1 23 23 H 1.09005 * 109.47274 * 300.00321 * 3 2 1 24 24 H 1.07993 * 126.33029 * 359.97438 * 5 4 3 25 25 H 1.07999 * 125.38882 * 179.88308 * 6 5 4 26 26 H 0.97005 * 119.99230 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3841 1.5340 1.1149 6 6 5.6634 1.4999 0.6645 7 8 5.6580 1.3834 -0.6728 8 6 4.3820 1.3453 -1.1146 9 6 3.9723 1.2299 -2.4456 10 1 2.9243 1.1154 -2.6801 11 6 4.9215 1.2628 -3.4764 12 7 6.1976 1.2822 -3.1898 13 14 4.3642 1.2790 -5.2592 14 1 4.3066 2.6803 -5.7472 15 1 5.3261 0.5061 -6.0856 16 1 3.0168 0.6632 -5.3622 17 1 -0.3634 0.5138 0.8900 18 1 -0.3633 0.5139 -0.8901 19 1 -0.3633 -1.0276 -0.0005 20 1 1.8934 -0.5138 -0.8900 21 1 1.8933 -0.5138 0.8899 22 1 1.6767 1.9563 0.8900 23 1 1.6767 1.9564 -0.8900 24 1 4.0705 1.6188 2.1448 25 1 6.5463 1.5533 1.2842 26 1 6.8545 1.3053 -3.9032 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259911512.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:28 Heat of formation + Delta-G solvation = -25.446109 kcal Electronic energy + Delta-G solvation = -10570.341772 eV Core-core repulsion = 8614.330864 eV Total energy + Delta-G solvation = -1956.010908 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.18776 -34.48651 -33.55305 -30.83594 -28.93515 -26.35895 -24.01041 -20.87608 -20.05867 -18.59259 -17.03352 -15.26798 -14.64260 -14.22901 -13.87347 -13.27624 -12.71916 -12.36229 -11.96747 -11.59018 -11.32369 -11.04917 -10.83576 -10.52877 -10.39776 -10.18480 -9.96755 -9.48107 -9.41256 -7.92394 -7.07458 -6.79596 -4.32136 2.92426 3.06008 3.10778 3.65753 3.90755 4.13948 5.14944 5.25905 5.72109 5.78828 5.92681 6.26149 6.43628 6.58377 6.62018 6.69141 6.73117 6.96414 7.06814 7.20697 7.33462 7.46984 7.87518 8.07867 8.31134 8.68003 8.82225 9.37117 10.20403 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.034442 B = 0.016573 C = 0.011602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.776051 B = 1689.119430 C = 2412.886160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.006 4.006 4 C -0.368 4.368 5 C -0.167 4.167 6 C -0.186 4.186 7 O -0.160 6.160 8 C 0.211 3.789 9 C -0.443 4.443 10 H 0.102 0.898 11 C 0.067 3.933 12 N -0.780 5.780 13 Si 0.919 3.081 14 H -0.268 1.268 15 H -0.276 1.276 16 H -0.259 1.259 17 H 0.045 0.955 18 H 0.049 0.951 19 H 0.043 0.957 20 H 0.061 0.939 21 H 0.050 0.950 22 H 0.038 0.962 23 H 0.048 0.952 24 H 0.107 0.893 25 H 0.160 0.840 26 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.809 -0.806 0.620 4.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.044 4.044 4 C -0.370 4.370 5 C -0.187 4.187 6 C -0.253 4.253 7 O -0.057 6.057 8 C 0.158 3.842 9 C -0.473 4.473 10 H 0.120 0.880 11 C -0.153 4.153 12 N -0.407 5.407 13 Si 0.743 3.257 14 H -0.193 1.193 15 H -0.201 1.201 16 H -0.183 1.183 17 H 0.064 0.936 18 H 0.068 0.932 19 H 0.062 0.938 20 H 0.080 0.920 21 H 0.069 0.931 22 H 0.057 0.943 23 H 0.067 0.933 24 H 0.125 0.875 25 H 0.177 0.823 26 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.314 -0.823 0.387 4.409 hybrid contribution -0.130 0.026 -0.480 0.498 sum -4.444 -0.796 -0.092 4.516 Atomic orbital electron populations 1.21817 0.97559 1.00354 1.00981 1.21571 0.93413 0.99031 1.01657 1.19329 0.91658 0.94235 0.99171 1.19869 0.94209 1.30687 0.92251 1.20881 0.93364 1.07077 0.97330 1.23130 0.97401 1.21409 0.83318 1.84421 1.28878 1.72718 1.19675 1.19444 0.79483 0.92144 0.93120 1.18692 0.95252 1.46041 0.87276 0.88042 1.26123 0.94465 0.92470 1.02237 1.69802 1.01455 1.33937 1.35488 0.86111 0.79748 0.79199 0.80657 1.19312 1.20079 1.18302 0.93551 0.93175 0.93787 0.92037 0.93112 0.94292 0.93317 0.87465 0.82285 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 37.16 0.37 -1.95 15 2 C -0.12 -2.30 5.92 -26.73 -0.16 -2.46 15 3 C -0.01 -0.14 5.43 -27.89 -0.15 -0.29 15 4 C -0.37 -9.49 5.53 -103.56 -0.57 -10.07 15 5 C -0.17 -4.12 10.81 -39.93 -0.43 -4.55 15 6 C -0.19 -4.75 12.07 29.81 0.36 -4.39 15 7 O -0.16 -4.68 8.99 3.68 0.03 -4.65 15 8 C 0.21 6.01 6.79 -38.53 -0.26 5.74 15 9 C -0.44 -12.07 9.07 -38.30 -0.35 -12.42 15 10 H 0.10 2.60 7.54 -52.48 -0.40 2.20 15 11 C 0.07 1.74 5.49 -17.27 -0.09 1.64 15 12 N -0.78 -21.29 12.03 55.56 0.67 -20.62 15 13 Si 0.92 18.91 29.57 -169.99 -5.03 13.88 15 14 H -0.27 -5.42 7.11 56.52 0.40 -5.02 15 15 H -0.28 -5.53 7.11 56.52 0.40 -5.13 15 16 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 17 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 18 H 0.05 0.75 8.14 -51.92 -0.42 0.32 15 19 H 0.04 0.61 8.14 -51.93 -0.42 0.18 15 20 H 0.06 1.28 8.14 -51.93 -0.42 0.85 15 21 H 0.05 0.98 8.14 -51.93 -0.42 0.56 15 22 H 0.04 0.78 8.14 -51.93 -0.42 0.36 15 23 H 0.05 1.05 7.88 -51.93 -0.41 0.64 15 24 H 0.11 2.32 8.06 -52.49 -0.42 1.90 15 25 H 0.16 3.43 8.06 -52.49 -0.42 3.01 15 26 H 0.28 6.92 8.30 -40.82 -0.34 6.58 15 LS Contribution 231.63 15.07 3.49 3.49 Total: -1.00 -29.28 231.63 -5.44 -34.73 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -3.32 Total: 1.91 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: -1.29 Total: -28.74 kcal Atomic # 7 Polarization: -21.29 SS G_CDS: 0.67 Total: -20.62 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: 0.03 Total: -4.65 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -29.28 -5.44 -34.73 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259911512.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.280 kcal (2) G-P(sol) polarization free energy of solvation -29.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds