Wall clock time and date at job start Mon Mar 30 2020 01:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47311 * 2 1 4 4 C 1.50693 * 109.47241 * 180.02562 * 3 2 1 5 5 C 1.39767 * 126.76806 * 265.30324 * 4 3 2 6 6 C 1.35672 * 107.34604 * 180.12405 * 5 4 3 7 7 O 1.34236 * 109.21649 * 359.61502 * 6 5 4 8 8 C 1.35088 * 109.39016 * 0.24320 * 7 6 5 9 9 C 1.39747 * 126.20836 * 179.97438 * 8 7 6 10 10 H 1.08005 * 120.00141 * 174.23263 * 9 8 7 11 11 C 1.40161 * 120.00101 * 354.23866 * 9 8 7 12 12 N 1.30807 * 119.99397 * 6.04270 * 11 9 8 13 13 Si 1.86794 * 120.00207 * 186.04798 * 11 9 8 14 14 H 1.48496 * 109.47463 * 94.97900 * 13 11 9 15 15 H 1.48508 * 109.47032 * 214.98049 * 13 11 9 16 16 H 1.48497 * 109.47085 * 334.97561 * 13 11 9 17 17 H 1.09001 * 109.47228 * 299.99974 * 1 2 3 18 18 H 1.09010 * 109.46805 * 59.99890 * 1 2 3 19 19 H 1.08994 * 109.47213 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47228 * 240.00026 * 2 1 3 21 21 H 1.08993 * 109.46990 * 120.00080 * 2 1 3 22 22 H 1.09001 * 109.46954 * 59.99858 * 3 2 1 23 23 H 1.09005 * 109.47274 * 300.00321 * 3 2 1 24 24 H 1.07993 * 126.33029 * 359.97438 * 5 4 3 25 25 H 1.07999 * 125.38882 * 179.88308 * 6 5 4 26 26 H 0.97005 * 119.99230 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3841 1.5340 1.1149 6 6 5.6634 1.4999 0.6645 7 8 5.6580 1.3834 -0.6728 8 6 4.3820 1.3453 -1.1146 9 6 3.9723 1.2299 -2.4456 10 1 2.9243 1.1154 -2.6801 11 6 4.9215 1.2628 -3.4764 12 7 6.1976 1.2822 -3.1898 13 14 4.3642 1.2790 -5.2592 14 1 4.3066 2.6803 -5.7472 15 1 5.3261 0.5061 -6.0856 16 1 3.0168 0.6632 -5.3622 17 1 -0.3634 0.5138 0.8900 18 1 -0.3633 0.5139 -0.8901 19 1 -0.3633 -1.0276 -0.0005 20 1 1.8934 -0.5138 -0.8900 21 1 1.8933 -0.5138 0.8899 22 1 1.6767 1.9563 0.8900 23 1 1.6767 1.9564 -0.8900 24 1 4.0705 1.6188 2.1448 25 1 6.5463 1.5533 1.2842 26 1 6.8545 1.3053 -3.9032 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259911512.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:27 Heat of formation + Delta-G solvation = -42.294291 kcal Electronic energy + Delta-G solvation = -10571.072364 eV Core-core repulsion = 8614.330864 eV Total energy + Delta-G solvation = -1956.741500 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.22960 -36.16943 -35.50938 -32.66184 -30.92646 -28.07727 -25.90731 -22.45064 -22.04727 -20.53511 -19.05342 -17.21291 -16.44249 -15.96797 -15.76922 -15.09965 -14.22618 -14.08378 -13.56833 -13.30924 -13.00868 -12.91480 -12.63573 -12.17995 -11.96922 -11.82839 -11.68814 -11.31599 -11.21933 -9.90168 -9.12621 -8.73038 -6.35674 1.21365 1.37616 1.54517 1.74009 2.18345 2.20195 3.17413 3.25564 4.25126 4.37764 4.50802 4.61027 4.78436 4.90152 5.00100 5.12020 5.18752 5.23327 5.35457 5.44682 5.51946 5.67238 5.92992 6.06326 6.35576 6.69291 6.80714 7.32548 8.30090 Molecular weight = 180.09amu Principal moments of inertia in cm(-1) A = 0.034442 B = 0.016573 C = 0.011602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.776051 B = 1689.119430 C = 2412.886160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C -0.006 4.006 4 C -0.378 4.378 5 C -0.171 4.171 6 C -0.205 4.205 7 O -0.192 6.192 8 C 0.166 3.834 9 C -0.471 4.471 10 H 0.108 0.892 11 C 0.019 3.981 12 N -0.823 5.823 13 Si 1.000 3.000 14 H -0.260 1.260 15 H -0.266 1.266 16 H -0.249 1.249 17 H 0.062 0.938 18 H 0.054 0.946 19 H 0.061 0.939 20 H 0.037 0.963 21 H 0.048 0.952 22 H 0.057 0.943 23 H 0.043 0.957 24 H 0.140 0.860 25 H 0.191 0.809 26 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.211 -0.878 0.374 6.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.044 4.044 4 C -0.381 4.381 5 C -0.190 4.190 6 C -0.270 4.270 7 O -0.090 6.090 8 C 0.114 3.886 9 C -0.500 4.500 10 H 0.126 0.874 11 C -0.197 4.197 12 N -0.450 5.450 13 Si 0.819 3.181 14 H -0.184 1.184 15 H -0.190 1.190 16 H -0.172 1.172 17 H 0.081 0.919 18 H 0.073 0.927 19 H 0.080 0.920 20 H 0.056 0.944 21 H 0.067 0.933 22 H 0.076 0.924 23 H 0.061 0.939 24 H 0.157 0.843 25 H 0.208 0.792 26 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.723 -0.896 0.166 5.795 hybrid contribution 0.345 0.057 -0.280 0.448 sum -5.378 -0.839 -0.114 5.444 Atomic orbital electron populations 1.21738 0.94165 1.01954 1.02014 1.21465 0.96346 0.96938 1.00403 1.19414 0.89168 0.96023 0.99754 1.20492 0.96366 1.29332 0.91897 1.21281 0.92898 1.06173 0.98652 1.23902 0.99329 1.21239 0.82549 1.84371 1.29766 1.73368 1.21465 1.20077 0.79863 0.94037 0.94664 1.19056 0.96038 1.47103 0.87850 0.87414 1.27185 0.94131 0.91166 1.07193 1.69885 1.02909 1.34684 1.37521 0.84918 0.79680 0.79627 0.73905 1.18445 1.19017 1.17234 0.91937 0.92734 0.91954 0.94376 0.93337 0.92417 0.93854 0.84265 0.79175 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.91 71.98 0.71 -3.27 15 2 C -0.11 -4.26 5.92 30.59 0.18 -4.07 15 3 C -0.01 -0.26 5.43 29.85 0.16 -0.10 15 4 C -0.38 -19.56 5.53 -19.18 -0.11 -19.66 15 5 C -0.17 -8.29 10.81 22.04 0.24 -8.06 15 6 C -0.20 -10.45 12.07 67.23 0.81 -9.63 15 7 O -0.19 -11.49 8.99 -9.74 -0.09 -11.57 15 8 C 0.17 9.66 6.79 22.95 0.16 9.81 15 9 C -0.47 -26.20 9.07 23.10 0.21 -25.99 15 10 H 0.11 5.61 7.54 -2.91 -0.02 5.59 15 11 C 0.02 0.99 5.49 85.31 0.47 1.46 15 12 N -0.82 -45.80 12.03 21.87 0.26 -45.54 15 13 Si 1.00 38.50 29.57 68.60 2.03 40.53 15 14 H -0.26 -9.61 7.11 99.48 0.71 -8.90 15 15 H -0.27 -9.71 7.11 99.48 0.71 -9.00 15 16 H -0.25 -9.08 7.11 99.48 0.71 -8.38 15 17 H 0.06 1.56 8.14 -2.39 -0.02 1.55 15 18 H 0.05 1.48 8.14 -2.38 -0.02 1.46 15 19 H 0.06 1.53 8.14 -2.39 -0.02 1.51 15 20 H 0.04 1.57 8.14 -2.39 -0.02 1.55 15 21 H 0.05 1.80 8.14 -2.39 -0.02 1.78 15 22 H 0.06 2.19 8.14 -2.39 -0.02 2.17 15 23 H 0.04 1.85 7.88 -2.38 -0.02 1.83 15 24 H 0.14 5.70 8.06 -2.91 -0.02 5.68 15 25 H 0.19 8.06 8.06 -2.91 -0.02 8.03 15 26 H 0.29 14.45 8.30 -92.70 -0.77 13.68 15 Total: -1.00 -63.71 231.63 6.19 -57.52 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 1.15 Total: 18.57 kcal Atomic # 6 Polarization: -62.34 SS G_CDS: 2.83 Total: -59.51 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.26 Total: -45.54 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -0.09 Total: -11.57 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.53 kcal Total: -63.71 6.19 -57.52 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259911512.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.226 kcal (2) G-P(sol) polarization free energy of solvation -63.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds