Wall clock time and date at job start Mon Mar 30 2020 01:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32925 * 1 3 3 C 1.47141 * 120.00096 * 2 1 4 4 N 1.31424 * 126.39668 * 359.97438 * 3 2 1 5 5 N 1.28655 * 109.22484 * 180.02562 * 4 3 2 6 6 C 1.30406 * 109.55346 * 0.02562 * 5 4 3 7 7 C 1.50700 * 126.17166 * 179.97438 * 6 5 4 8 8 C 1.50695 * 109.47171 * 90.03925 * 7 6 5 9 9 H 1.08004 * 120.00253 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00051 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99634 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00215 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47026 * 60.00334 * 12 10 8 14 14 H 1.48496 * 109.47285 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47244 * 300.00337 * 12 10 8 16 16 O 1.34432 * 107.66059 * 359.97438 * 6 5 4 17 17 H 1.07998 * 120.00232 * 359.97438 * 1 2 3 18 18 H 1.08006 * 120.00282 * 180.02562 * 1 2 3 19 19 H 1.07997 * 119.99705 * 180.02562 * 2 1 3 20 20 H 1.09004 * 109.46853 * 210.03411 * 7 6 5 21 21 H 1.08998 * 109.47069 * 330.03774 * 7 6 5 22 22 H 0.97006 * 119.99676 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3293 0.0000 0.0000 3 6 2.0650 1.2743 0.0000 4 7 1.5388 2.4786 -0.0005 5 7 2.4823 3.3531 -0.0008 6 6 3.6378 2.7486 -0.0012 7 6 4.9899 3.4142 -0.0022 8 6 5.4417 3.6358 1.4182 9 1 4.8126 3.3261 2.2396 10 6 6.6584 4.2340 1.6692 11 7 7.4247 4.6106 0.6689 12 14 7.2183 4.5094 3.4299 13 1 7.3095 3.2032 4.1304 14 1 8.5512 5.1640 3.4289 15 1 6.2395 5.3793 4.1303 16 8 3.4053 1.4245 -0.0004 17 1 -0.5400 0.9353 0.0004 18 1 -0.5401 -0.9353 0.0004 19 1 1.8692 -0.9353 -0.0004 20 1 5.7085 2.7761 -0.5167 21 1 4.9224 4.3731 -0.5159 22 1 8.2806 5.0318 0.8455 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259923619.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:15 Heat of formation + Delta-G solvation = 45.390118 kcal Electronic energy + Delta-G solvation = -10001.928977 eV Core-core repulsion = 7945.449415 eV Total energy + Delta-G solvation = -2056.479562 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 180.064 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -43.32065 -35.39968 -34.46841 -33.42221 -30.76358 -27.64364 -24.10282 -23.69685 -21.31048 -20.19098 -17.02804 -16.75407 -16.03642 -15.15059 -14.73918 -13.94314 -13.08558 -12.45733 -12.09765 -11.71078 -11.66762 -11.26097 -11.05259 -10.84950 -10.62485 -10.34953 -10.03948 -9.70711 -8.63376 -8.28948 -6.26622 -4.33017 1.19900 2.60934 3.00599 3.24855 3.27193 3.28885 3.34374 4.29093 4.53778 5.01170 5.08951 5.36456 5.46519 5.89007 6.15819 6.30873 6.43211 6.55192 7.08814 7.17111 7.66237 7.89679 8.66922 9.03287 9.31841 10.83496 Molecular weight = 180.06amu Principal moments of inertia in cm(-1) A = 0.081627 B = 0.009552 C = 0.009202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.940425 B = 2930.606773 C = 3042.082205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.077 4.077 3 C 0.142 3.858 4 N -0.281 5.281 5 N -0.318 5.318 6 C 0.229 3.771 7 C 0.103 3.897 8 C -0.527 4.527 9 H 0.061 0.939 10 C 0.066 3.934 11 N -0.888 5.888 12 Si 0.908 3.092 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.273 1.273 16 O -0.225 6.225 17 H 0.114 0.886 18 H 0.121 0.879 19 H 0.138 0.862 20 H 0.055 0.945 21 H 0.072 0.928 22 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.420 -7.966 -0.875 10.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.097 4.097 3 C -0.066 4.066 4 N -0.129 5.129 5 N -0.164 5.164 6 C 0.021 3.979 7 C 0.065 3.935 8 C -0.565 4.565 9 H 0.079 0.921 10 C -0.137 4.137 11 N -0.525 5.525 12 Si 0.735 3.265 13 H -0.200 1.200 14 H -0.208 1.208 15 H -0.198 1.198 16 O -0.105 6.105 17 H 0.132 0.868 18 H 0.139 0.861 19 H 0.156 0.844 20 H 0.073 0.927 21 H 0.090 0.910 22 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.079 -6.892 -0.932 10.660 hybrid contribution 1.253 -0.777 0.930 1.743 sum -6.825 -7.669 -0.002 10.266 Atomic orbital electron populations 1.24503 0.94474 1.03475 0.94711 1.20388 0.94013 0.90676 1.04623 1.25770 0.78798 0.97260 1.04765 1.74588 1.25861 0.96457 1.16033 1.74403 0.95852 1.25103 1.21042 1.29604 1.00898 0.75720 0.91659 1.18225 0.79699 0.95433 1.00174 1.20784 1.03887 1.41764 0.90104 0.92118 1.24946 0.95917 0.94661 0.98222 1.69919 1.11716 1.39819 1.31095 0.86382 0.77903 0.78699 0.83537 1.19967 1.20838 1.19816 1.84914 1.25604 1.30113 1.69861 0.86769 0.86122 0.84433 0.92732 0.90992 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 14.39 28.90 0.42 -0.99 14 2 C -0.08 -1.04 10.20 -37.81 -0.39 -1.43 14 3 C 0.14 2.77 8.16 -14.11 -0.12 2.65 14 4 N -0.28 -6.14 11.79 31.94 0.38 -5.76 14 5 N -0.32 -7.74 12.22 32.59 0.40 -7.35 14 6 C 0.23 5.53 7.66 -12.88 -0.10 5.43 14 7 C 0.10 2.64 5.60 -29.04 -0.16 2.48 14 8 C -0.53 -14.66 9.09 -34.44 -0.31 -14.97 14 9 H 0.06 1.70 7.74 -52.48 -0.41 1.30 14 10 C 0.07 1.81 5.46 -17.82 -0.10 1.71 14 11 N -0.89 -25.12 13.29 55.43 0.74 -24.38 14 12 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 14 13 H -0.27 -6.28 7.11 56.52 0.40 -5.87 14 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 14 15 H -0.27 -6.31 7.11 56.52 0.40 -5.91 14 16 O -0.22 -4.97 10.90 3.77 0.04 -4.93 14 17 H 0.11 1.36 7.71 -52.49 -0.40 0.95 14 18 H 0.12 0.84 8.06 -52.48 -0.42 0.41 14 19 H 0.14 1.46 8.06 -52.49 -0.42 1.04 14 20 H 0.05 1.40 8.14 -51.93 -0.42 0.97 14 21 H 0.07 1.89 8.14 -51.93 -0.42 1.47 14 22 H 0.27 7.15 8.31 -40.82 -0.34 6.81 14 LS Contribution 215.78 15.07 3.25 3.25 Total: -1.00 -30.43 215.78 -2.61 -33.04 By element: Atomic # 1 Polarization: -3.21 SS G_CDS: -1.64 Total: -4.85 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -0.76 Total: -5.11 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 1.51 Total: -37.49 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: 0.04 Total: -4.93 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -30.43 -2.61 -33.04 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259923619.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.434 kcal (2) G-P(sol) polarization free energy of solvation -30.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds