Wall clock time and date at job start Mon Mar 30 2020 02:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00111 * 2 1 4 4 H 1.48503 * 109.46972 * 240.00468 * 3 2 1 5 5 H 1.48506 * 109.46896 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47181 * 120.00346 * 3 2 1 7 7 C 1.37882 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99769 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99879 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.47459 * 299.99970 * 9 7 2 11 11 C 1.53005 * 109.47109 * 60.00141 * 9 7 2 12 12 N 1.46895 * 109.46827 * 184.99671 * 11 9 7 13 13 C 1.50698 * 109.46981 * 179.97438 * 9 7 2 14 14 C 1.40896 * 126.29107 * 120.00251 * 13 9 7 15 15 C 1.34847 * 107.41771 * 180.25183 * 14 13 9 16 16 N 1.36349 * 108.21761 * 359.63274 * 15 14 13 17 17 H 0.96999 * 125.63198 * 180.15402 * 16 15 14 18 18 C 1.34849 * 126.29406 * 300.02904 * 13 9 7 19 19 H 0.96997 * 119.99679 * 359.97438 * 1 2 3 20 20 H 1.08993 * 109.46971 * 305.00156 * 11 9 7 21 21 H 1.09007 * 109.46898 * 65.00021 * 11 9 7 22 22 H 1.00893 * 111.00204 * 56.04881 * 12 11 9 23 23 H 1.00912 * 110.99607 * 180.02562 * 12 11 9 24 24 H 1.08002 * 126.28729 * 359.97438 * 14 13 9 25 25 H 1.07999 * 125.89060 * 179.74794 * 15 14 13 26 26 H 1.08004 * 125.89369 * 359.95174 * 18 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 6 0.3709 -2.5799 -1.2495 12 7 -0.4523 -3.7951 -1.1906 13 6 2.2303 -3.6446 -0.0018 14 6 2.3413 -4.6479 0.9811 15 6 3.3397 -5.4727 0.6051 16 7 3.8437 -5.0200 -0.5782 17 1 4.5697 -5.4274 -1.0760 18 6 3.1617 -3.8974 -0.9436 19 1 -0.4849 0.8400 0.0004 20 1 -0.2765 -1.7042 -1.2950 21 1 1.0024 -2.6115 -2.1375 22 1 -0.9996 -3.8204 -0.3434 23 1 -1.0428 -3.8716 -2.0054 24 1 1.7405 -4.7371 1.8742 25 1 3.6800 -6.3428 1.1467 26 1 3.3369 -3.3119 -1.8341 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259946485.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:59 Heat of formation + Delta-G solvation = 40.564053 kcal Electronic energy + Delta-G solvation = -10638.411234 eV Core-core repulsion = 8717.555492 eV Total energy + Delta-G solvation = -1920.855741 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.02758 -34.97745 -31.99250 -30.45994 -28.55310 -26.43401 -23.67239 -21.18414 -19.65016 -18.08877 -17.13911 -16.17156 -14.54331 -14.21004 -13.28865 -13.07923 -12.75970 -12.46011 -12.14513 -11.81009 -11.13075 -10.98294 -10.88656 -10.51425 -9.76011 -9.45622 -9.09566 -8.34463 -7.63641 -7.40776 -6.95491 -5.92129 -3.98024 3.22446 3.35467 3.39635 3.42969 4.18663 4.21417 4.51874 5.35104 5.84222 5.92887 6.22113 6.47057 6.69228 6.88997 7.22851 7.25507 7.34993 7.68116 7.83905 8.04430 8.09144 8.26177 8.36240 8.51972 8.55608 8.67339 9.07618 9.65555 11.11514 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.045724 B = 0.014447 C = 0.012110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.228267 B = 1937.690113 C = 2311.513800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.499 4.499 8 H 0.056 0.944 9 C 0.111 3.889 10 H 0.027 0.973 11 C 0.067 3.933 12 N -0.854 5.854 13 C -0.090 4.090 14 C -0.197 4.197 15 C -0.044 4.044 16 N -0.573 5.573 17 H 0.400 0.600 18 C -0.034 4.034 19 H 0.259 0.741 20 H 0.062 0.938 21 H 0.038 0.962 22 H 0.328 0.672 23 H 0.314 0.686 24 H 0.120 0.880 25 H 0.147 0.853 26 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.544 -6.589 -1.535 7.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.538 4.538 8 H 0.075 0.925 9 C 0.091 3.909 10 H 0.045 0.955 11 C -0.062 4.062 12 N -0.380 5.380 13 C -0.096 4.096 14 C -0.223 4.223 15 C -0.174 4.174 16 N -0.169 5.169 17 H 0.235 0.765 18 C -0.162 4.162 19 H 0.069 0.931 20 H 0.080 0.920 21 H 0.056 0.944 22 H 0.139 0.861 23 H 0.123 0.877 24 H 0.138 0.862 25 H 0.164 0.836 26 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.209 -6.886 -1.621 8.231 hybrid contribution -0.015 1.406 -0.206 1.421 sum 4.194 -5.479 -1.826 7.138 Atomic orbital electron populations 1.69869 1.05852 1.26370 1.51407 1.25004 0.94871 0.99015 0.95374 0.86664 0.79575 0.83210 0.78577 1.20386 1.21423 1.20329 1.21211 0.93022 0.90057 1.49510 0.92549 1.17229 0.90797 0.89066 0.93788 0.95463 1.21997 0.95985 0.89575 0.98693 1.58997 1.29346 1.44089 1.05572 1.19922 0.98288 0.97466 0.93883 1.20813 1.01470 0.98379 1.01638 1.21497 1.01983 1.02955 0.90949 1.41804 1.30949 1.24170 1.20006 0.76550 1.21462 0.99589 0.92164 1.02957 0.93101 0.92036 0.94366 0.86148 0.87657 0.86152 0.83562 0.83211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.59 11.29 55.43 0.63 -24.96 15 2 C 0.06 1.60 5.29 -17.82 -0.09 1.51 15 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 15 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 7 C -0.50 -13.95 8.40 -34.44 -0.29 -14.23 15 8 H 0.06 1.58 7.71 -52.49 -0.40 1.18 15 9 C 0.11 2.87 2.29 -92.92 -0.21 2.66 15 10 H 0.03 0.77 8.13 -51.93 -0.42 0.35 15 11 C 0.07 1.64 5.95 -3.82 -0.02 1.62 15 12 N -0.85 -17.86 9.34 -10.37 -0.10 -17.96 15 13 C -0.09 -2.09 4.54 -104.82 -0.48 -2.57 15 14 C -0.20 -4.15 10.80 -39.78 -0.43 -4.58 15 15 C -0.04 -0.77 11.94 -16.75 -0.20 -0.97 15 16 N -0.57 -9.80 6.07 -12.85 -0.08 -9.88 15 17 H 0.40 5.17 8.96 -40.82 -0.37 4.81 15 18 C -0.03 -0.70 11.24 -16.75 -0.19 -0.89 15 19 H 0.26 7.11 8.31 -40.82 -0.34 6.77 15 20 H 0.06 1.65 5.95 -51.93 -0.31 1.34 15 21 H 0.04 0.93 7.87 -51.92 -0.41 0.52 15 22 H 0.33 6.73 8.99 -39.30 -0.35 6.37 15 23 H 0.31 5.78 9.08 -39.29 -0.36 5.43 15 24 H 0.12 2.42 8.06 -52.49 -0.42 1.99 15 25 H 0.15 2.02 8.06 -52.49 -0.42 1.60 15 26 H 0.15 3.00 8.06 -52.48 -0.42 2.58 15 LS Contribution 227.20 15.07 3.42 3.42 Total: -1.00 -30.30 227.20 -6.08 -36.38 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -3.02 Total: 13.96 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -1.91 Total: -17.45 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.45 Total: -52.80 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -30.30 -6.08 -36.38 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259946485.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.947 kcal (2) G-P(sol) polarization free energy of solvation -30.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds