Wall clock time and date at job start Mon Mar 30 2020 02:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47686 * 2 1 4 4 C 1.50701 * 109.47110 * 239.99895 * 2 1 3 5 5 H 1.07997 * 120.00649 * 245.37931 * 4 2 1 6 6 C 1.37885 * 119.99787 * 65.37973 * 4 2 1 7 7 N 1.31512 * 119.99734 * 185.16878 * 6 4 2 8 8 Si 1.86797 * 119.99867 * 5.16533 * 6 4 2 9 9 H 1.48493 * 109.47132 * 270.00270 * 8 6 4 10 10 H 1.48498 * 109.46985 * 30.00223 * 8 6 4 11 11 H 1.48499 * 109.47212 * 150.00004 * 8 6 4 12 12 C 1.50706 * 109.47408 * 120.00235 * 2 1 3 13 13 C 1.39869 * 125.89700 * 35.00056 * 12 2 1 14 14 C 1.35310 * 107.92344 * 180.02562 * 13 12 2 15 15 N 1.34955 * 107.74529 * 359.97438 * 14 13 12 16 16 C 1.46499 * 126.04026 * 179.97438 * 15 14 13 17 17 N 1.30837 * 125.90170 * 214.69000 * 12 2 1 18 18 H 1.09001 * 109.47403 * 174.94774 * 1 2 3 19 19 H 1.08999 * 109.46930 * 294.94116 * 1 2 3 20 20 H 1.08995 * 109.46839 * 54.94537 * 1 2 3 21 21 H 0.96990 * 120.00377 * 354.98909 * 7 6 4 22 22 H 1.08008 * 126.04105 * 359.97438 * 13 12 2 23 23 H 1.08002 * 126.13113 * 179.97438 * 14 13 12 24 24 H 1.09004 * 109.46379 * 90.00117 * 16 15 14 25 25 H 1.08994 * 109.47145 * 210.00240 * 16 15 14 26 26 H 1.08996 * 109.47172 * 330.00970 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5797 -1.6364 -1.1339 6 6 1.7930 -0.1782 -2.4797 7 7 2.1412 -0.8472 -3.5571 8 14 0.9743 1.4929 -2.6418 9 1 -0.4988 1.3182 -2.7073 10 1 1.3217 2.3304 -1.4657 11 1 1.4494 2.1588 -3.8812 12 6 2.0324 -0.7105 1.2305 13 6 1.4308 -1.8146 1.8430 14 6 2.1820 -2.1566 2.9152 15 7 3.2225 -1.2996 2.9786 16 6 4.2851 -1.3070 3.9871 17 7 3.1097 -0.4045 1.9069 18 1 -0.3634 -1.0237 -0.0905 19 1 -0.3633 0.4334 0.9318 20 1 -0.3633 0.5902 -0.8412 21 1 2.6310 -1.6802 -3.4736 22 1 0.5259 -2.3068 1.5182 23 1 1.9843 -2.9697 3.5980 24 1 5.1045 -1.9402 3.6468 25 1 4.6496 -0.2910 4.1383 26 1 3.8917 -1.6955 4.9264 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259951523.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:15 Heat of formation + Delta-G solvation = 70.445834 kcal Electronic energy + Delta-G solvation = -10534.700451 eV Core-core repulsion = 8615.140481 eV Total energy + Delta-G solvation = -1919.559970 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.44150 -34.78640 -32.37912 -30.69361 -29.41246 -25.85941 -24.64399 -21.72121 -20.38381 -18.43026 -17.33210 -16.32963 -14.91859 -14.33930 -13.54393 -13.39898 -12.80000 -12.64404 -12.18428 -12.10827 -11.65133 -11.07501 -10.84879 -10.43425 -10.06964 -9.69293 -9.52471 -8.80576 -8.45558 -8.28012 -7.87059 -6.34960 -4.00396 2.52094 3.11513 3.43266 3.51903 3.66452 3.69199 4.55406 4.90297 5.24793 5.33241 5.38728 5.52906 5.72507 6.20069 6.44097 6.47140 6.52920 6.72730 6.81209 7.09608 7.45698 7.49936 7.63287 8.12173 8.45703 8.56296 8.96689 9.68667 11.04226 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.065997 B = 0.011923 C = 0.011598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.162651 B = 2347.769216 C = 2413.555859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.077 3.923 3 H 0.042 0.958 4 C -0.577 4.577 5 H 0.056 0.944 6 C 0.027 3.973 7 N -0.915 5.915 8 Si 1.057 2.943 9 H -0.282 1.282 10 H -0.278 1.278 11 H -0.291 1.291 12 C 0.130 3.870 13 C -0.262 4.262 14 C 0.032 3.968 15 N -0.398 5.398 16 C 0.110 3.890 17 N -0.312 5.312 18 H 0.054 0.946 19 H 0.029 0.971 20 H 0.046 0.954 21 H 0.266 0.734 22 H 0.141 0.859 23 H 0.163 0.837 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.736 -0.633 13.091 13.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.056 3.944 3 H 0.060 0.940 4 C -0.616 4.616 5 H 0.074 0.926 6 C -0.176 4.176 7 N -0.550 5.550 8 Si 0.886 3.114 9 H -0.210 1.210 10 H -0.204 1.204 11 H -0.217 1.217 12 C -0.036 4.036 13 C -0.292 4.292 14 C -0.113 4.113 15 N -0.180 5.180 16 C -0.032 4.032 17 N -0.133 5.133 18 H 0.073 0.927 19 H 0.048 0.952 20 H 0.065 0.935 21 H 0.076 0.924 22 H 0.159 0.841 23 H 0.180 0.820 24 H 0.083 0.917 25 H 0.101 0.899 26 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.181 1.215 12.228 12.290 hybrid contribution 0.037 -1.985 1.170 2.304 sum -0.144 -0.770 13.398 13.421 Atomic orbital electron populations 1.22059 0.97855 1.01175 0.98635 1.17831 0.91897 0.95904 0.88749 0.94048 1.21907 1.39382 1.09940 0.90355 0.92621 1.25789 0.96567 1.03492 0.91769 1.70808 1.37113 1.16892 1.30197 0.83835 0.76234 0.75694 0.75612 1.20950 1.20369 1.21738 1.22847 0.90851 0.94620 0.95321 1.21420 1.05172 1.03025 0.99569 1.22335 0.90872 0.97173 1.00888 1.48475 1.20890 1.25352 1.23297 1.21622 0.89039 1.03767 0.88801 1.77378 1.21304 1.14926 0.99724 0.92715 0.95160 0.93528 0.92380 0.84130 0.81996 0.91687 0.89926 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.27 37.16 0.31 -2.79 15 2 C 0.08 1.98 2.34 -92.92 -0.22 1.76 15 3 H 0.04 1.09 6.65 -51.93 -0.35 0.75 15 4 C -0.58 -17.00 8.90 -34.44 -0.31 -17.31 15 5 H 0.06 1.80 7.97 -52.49 -0.42 1.38 15 6 C 0.03 0.81 5.43 -17.82 -0.10 0.72 15 7 N -0.92 -28.91 13.70 55.43 0.76 -28.15 15 8 Si 1.06 26.11 25.29 -169.99 -4.30 21.81 15 9 H -0.28 -6.53 6.81 56.52 0.38 -6.14 15 10 H -0.28 -6.46 6.36 56.52 0.36 -6.10 15 11 H -0.29 -7.17 7.11 56.52 0.40 -6.76 15 12 C 0.13 3.11 6.07 -82.40 -0.50 2.61 15 13 C -0.26 -5.34 9.99 -40.02 -0.40 -5.74 15 14 C 0.03 0.55 11.49 -17.22 -0.20 0.35 15 15 N -0.40 -7.26 4.01 -68.16 -0.27 -7.53 15 16 C 0.11 1.33 11.47 59.85 0.69 2.02 15 17 N -0.31 -7.26 12.58 33.67 0.42 -6.84 15 18 H 0.05 1.18 7.57 -51.93 -0.39 0.79 15 19 H 0.03 0.58 8.14 -51.93 -0.42 0.16 15 20 H 0.05 1.03 4.40 -51.93 -0.23 0.80 15 21 H 0.27 8.42 8.72 -40.82 -0.36 8.06 15 22 H 0.14 2.64 7.58 -52.48 -0.40 2.25 15 23 H 0.16 1.96 8.06 -52.49 -0.42 1.54 15 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 25 H 0.08 0.96 8.14 -51.93 -0.42 0.53 15 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 15 LS Contribution 223.33 15.07 3.37 3.37 Total: -1.00 -34.08 223.33 -3.86 -37.94 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: -3.11 Total: -2.21 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -0.72 Total: -18.39 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.91 Total: -42.52 kcal Atomic # 14 Polarization: 26.11 SS G_CDS: -4.30 Total: 21.81 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -34.08 -3.86 -37.94 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259951523.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.382 kcal (2) G-P(sol) polarization free energy of solvation -34.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds