Wall clock time and date at job start Mon Mar 30 2020 02:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47686 * 2 1 4 4 C 1.50701 * 109.47110 * 239.99895 * 2 1 3 5 5 H 1.07997 * 120.00649 * 245.37931 * 4 2 1 6 6 C 1.37885 * 119.99787 * 65.37973 * 4 2 1 7 7 N 1.31512 * 119.99734 * 185.16878 * 6 4 2 8 8 Si 1.86797 * 119.99867 * 5.16533 * 6 4 2 9 9 H 1.48493 * 109.47132 * 270.00270 * 8 6 4 10 10 H 1.48498 * 109.46985 * 30.00223 * 8 6 4 11 11 H 1.48499 * 109.47212 * 150.00004 * 8 6 4 12 12 C 1.50706 * 109.47408 * 120.00235 * 2 1 3 13 13 C 1.39869 * 125.89700 * 35.00056 * 12 2 1 14 14 C 1.35310 * 107.92344 * 180.02562 * 13 12 2 15 15 N 1.34955 * 107.74529 * 359.97438 * 14 13 12 16 16 C 1.46499 * 126.04026 * 179.97438 * 15 14 13 17 17 N 1.30837 * 125.90170 * 214.69000 * 12 2 1 18 18 H 1.09001 * 109.47403 * 174.94774 * 1 2 3 19 19 H 1.08999 * 109.46930 * 294.94116 * 1 2 3 20 20 H 1.08995 * 109.46839 * 54.94537 * 1 2 3 21 21 H 0.96990 * 120.00377 * 354.98909 * 7 6 4 22 22 H 1.08008 * 126.04105 * 359.97438 * 13 12 2 23 23 H 1.08002 * 126.13113 * 179.97438 * 14 13 12 24 24 H 1.09004 * 109.46379 * 90.00117 * 16 15 14 25 25 H 1.08994 * 109.47145 * 210.00240 * 16 15 14 26 26 H 1.08996 * 109.47172 * 330.00970 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5797 -1.6364 -1.1339 6 6 1.7930 -0.1782 -2.4797 7 7 2.1412 -0.8472 -3.5571 8 14 0.9743 1.4929 -2.6418 9 1 -0.4988 1.3182 -2.7073 10 1 1.3217 2.3304 -1.4657 11 1 1.4494 2.1588 -3.8812 12 6 2.0324 -0.7105 1.2305 13 6 1.4308 -1.8146 1.8430 14 6 2.1820 -2.1566 2.9152 15 7 3.2225 -1.2996 2.9786 16 6 4.2851 -1.3070 3.9871 17 7 3.1097 -0.4045 1.9069 18 1 -0.3634 -1.0237 -0.0905 19 1 -0.3633 0.4334 0.9318 20 1 -0.3633 0.5902 -0.8412 21 1 2.6310 -1.6802 -3.4736 22 1 0.5259 -2.3068 1.5182 23 1 1.9843 -2.9697 3.5980 24 1 5.1045 -1.9402 3.6468 25 1 4.6496 -0.2910 4.1383 26 1 3.8917 -1.6955 4.9264 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259951523.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:14 Heat of formation + Delta-G solvation = 45.538083 kcal Electronic energy + Delta-G solvation = -10535.780532 eV Core-core repulsion = 8615.140481 eV Total energy + Delta-G solvation = -1920.640051 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.95000 -36.68032 -34.22003 -32.46868 -30.92416 -27.17133 -26.73952 -23.57829 -21.79589 -20.23825 -19.49143 -17.73735 -16.27192 -16.18968 -15.36696 -14.73916 -14.53919 -14.48501 -13.57690 -13.47011 -13.27414 -12.91413 -12.65669 -12.32569 -11.80866 -11.57373 -11.26475 -10.90848 -10.64434 -10.04202 -9.37159 -8.71223 -6.39704 1.08219 1.45166 1.57377 1.74688 1.84985 2.03491 2.49223 3.09667 3.75241 4.08282 4.29606 4.44506 4.59828 4.66119 4.69775 4.84958 4.95673 5.00428 5.18587 5.24355 5.66083 5.76012 5.98340 6.04455 6.34720 6.52308 6.96714 7.38919 8.64574 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.065997 B = 0.011923 C = 0.011598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.162651 B = 2347.769216 C = 2413.555859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.075 3.925 3 H 0.029 0.971 4 C -0.579 4.579 5 H 0.008 0.992 6 C -0.023 4.023 7 N -0.944 5.944 8 Si 1.095 2.905 9 H -0.251 1.251 10 H -0.257 1.257 11 H -0.291 1.291 12 C 0.095 3.905 13 C -0.296 4.296 14 C 0.062 3.938 15 N -0.392 5.392 16 C 0.097 3.903 17 N -0.359 5.359 18 H 0.053 0.947 19 H 0.060 0.940 20 H 0.048 0.952 21 H 0.249 0.751 22 H 0.148 0.852 23 H 0.222 0.778 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.621 -0.391 15.568 15.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.054 3.946 3 H 0.047 0.953 4 C -0.617 4.617 5 H 0.026 0.974 6 C -0.220 4.220 7 N -0.581 5.581 8 Si 0.916 3.084 9 H -0.176 1.176 10 H -0.181 1.181 11 H -0.218 1.218 12 C -0.071 4.071 13 C -0.326 4.326 14 C -0.085 4.085 15 N -0.175 5.175 16 C -0.043 4.043 17 N -0.182 5.182 18 H 0.073 0.927 19 H 0.079 0.921 20 H 0.066 0.934 21 H 0.058 0.942 22 H 0.165 0.835 23 H 0.238 0.762 24 H 0.095 0.905 25 H 0.102 0.898 26 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.054 1.445 14.732 14.840 hybrid contribution 0.468 -2.186 0.554 2.303 sum -0.586 -0.741 15.286 15.315 Atomic orbital electron populations 1.21918 0.95132 1.01560 1.00283 1.17705 0.94076 0.94729 0.88120 0.95294 1.22038 1.38481 1.08373 0.92849 0.97397 1.27333 0.96697 1.06610 0.91332 1.70943 1.38960 1.16893 1.31305 0.83404 0.77252 0.71403 0.76332 1.17579 1.18131 1.21752 1.22710 0.92210 0.96451 0.95686 1.21628 1.06654 1.03045 1.01243 1.23101 0.88669 0.96835 0.99871 1.48915 1.21981 1.24058 1.22513 1.22132 0.88338 1.04694 0.89127 1.77219 1.21558 1.17555 1.01830 0.92744 0.92133 0.93375 0.94224 0.83461 0.76206 0.90495 0.89751 0.85710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.65 8.27 71.98 0.60 -5.06 15 2 C 0.07 3.84 2.34 -12.29 -0.03 3.81 15 3 H 0.03 1.53 6.65 -2.39 -0.02 1.52 15 4 C -0.58 -35.32 8.90 25.60 0.23 -35.09 15 5 H 0.01 0.52 7.97 -2.91 -0.02 0.50 15 6 C -0.02 -1.43 5.43 84.66 0.46 -0.97 15 7 N -0.94 -61.67 13.70 21.45 0.29 -61.37 15 8 Si 1.09 52.11 25.29 68.60 1.73 53.84 15 9 H -0.25 -10.66 6.81 99.48 0.68 -9.98 15 10 H -0.26 -11.27 6.36 99.48 0.63 -10.63 15 11 H -0.29 -13.78 7.11 99.48 0.71 -13.07 15 12 C 0.09 4.52 6.07 43.10 0.26 4.78 15 13 C -0.30 -11.67 9.99 21.99 0.22 -11.45 15 14 C 0.06 1.89 11.49 83.54 0.96 2.85 15 15 N -0.39 -13.27 4.01 -369.57 -1.48 -14.76 15 16 C 0.10 1.98 11.47 127.77 1.47 3.45 15 17 N -0.36 -16.55 12.58 -47.38 -0.60 -17.15 15 18 H 0.05 2.30 7.57 -2.39 -0.02 2.29 15 19 H 0.06 2.22 8.14 -2.39 -0.02 2.20 15 20 H 0.05 2.02 4.40 -2.39 -0.01 2.01 15 21 H 0.25 16.60 8.72 -92.72 -0.81 15.79 15 22 H 0.15 5.38 7.58 -2.91 -0.02 5.36 15 23 H 0.22 3.96 8.06 -2.91 -0.02 3.94 15 24 H 0.08 1.44 8.14 -2.38 -0.02 1.42 15 25 H 0.08 1.72 8.14 -2.39 -0.02 1.70 15 26 H 0.12 1.43 8.14 -2.39 -0.02 1.41 15 Total: -1.00 -77.79 223.33 5.13 -72.67 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: 1.02 Total: 4.45 kcal Atomic # 6 Polarization: -41.84 SS G_CDS: 4.16 Total: -37.68 kcal Atomic # 7 Polarization: -91.49 SS G_CDS: -1.79 Total: -93.27 kcal Atomic # 14 Polarization: 52.11 SS G_CDS: 1.73 Total: 53.84 kcal Total: -77.79 5.13 -72.67 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259951523.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.203 kcal (2) G-P(sol) polarization free energy of solvation -77.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds