Wall clock time and date at job start Mon Mar 30 2020 02:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.48531 * 110.99507 * 2 1 4 4 C 1.54937 * 103.22364 * 159.72268 * 3 2 1 5 5 H 1.08996 * 110.72531 * 80.94778 * 4 3 2 6 6 C 1.47211 * 110.72453 * 204.22663 * 4 3 2 7 7 N 4.73088 * 127.02566 * 25.00757 * 2 1 3 8 8 C 1.54595 * 102.92295 * 322.58255 * 4 3 2 9 9 H 1.08996 * 110.31274 * 263.04165 * 8 4 3 10 10 C 1.50704 * 110.30751 * 140.87467 * 8 4 3 11 11 H 1.08006 * 120.00072 * 0.02562 * 10 8 4 12 12 C 1.37872 * 119.99976 * 180.02562 * 10 8 4 13 13 N 1.31516 * 119.99967 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 119.99995 * 179.97438 * 12 10 8 15 15 H 1.48507 * 109.46887 * 90.00083 * 14 12 10 16 16 H 1.48505 * 109.47313 * 209.99577 * 14 12 10 17 17 H 1.48496 * 109.47382 * 330.00226 * 14 12 10 18 18 C 1.47902 * 111.00239 * 117.39806 * 2 1 3 19 19 H 1.08996 * 109.47130 * 59.87164 * 1 2 3 20 20 H 1.09000 * 109.46656 * 179.87219 * 1 2 3 21 21 H 1.08996 * 109.47192 * 299.87260 * 1 2 3 22 22 H 1.09003 * 110.66882 * 41.28926 * 3 2 1 23 23 H 1.08998 * 110.81198 * 278.22319 * 3 2 1 24 24 H 0.97007 * 119.99865 * 179.97438 * 13 12 10 25 25 H 1.09002 * 109.91566 * 333.50909 * 18 2 1 26 26 H 1.08997 * 109.91803 * 94.80251 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4491 1.2107 0.5227 5 1 4.1115 0.8838 -0.2788 6 6 3.9395 2.4593 1.1289 7 7 4.3179 3.4229 1.5967 8 6 3.2983 0.1054 1.5930 9 1 3.2137 0.5486 2.5853 10 6 4.4718 -0.8386 1.5390 11 1 5.2593 -0.6804 0.8170 12 6 4.5401 -1.9042 2.4113 13 7 3.5813 -2.0965 3.2908 14 14 5.9943 -3.0747 2.3438 15 1 7.0656 -2.5857 3.2486 16 1 5.5610 -4.4279 2.7758 17 1 6.5123 -3.1410 0.9538 18 6 1.9991 -0.6354 1.2259 19 1 -0.3633 0.5158 -0.8888 20 1 -0.3632 -1.0277 -0.0023 21 1 -0.3633 0.5118 0.8911 22 1 1.4236 2.0205 0.6730 23 1 2.0039 1.8005 -1.0084 24 1 3.6292 -2.8464 3.9042 25 1 1.2759 -0.5403 2.0359 26 1 2.2123 -1.6874 1.0364 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259996679.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:48 Heat of formation + Delta-G solvation = 25.764832 kcal Electronic energy + Delta-G solvation = -10627.162544 eV Core-core repulsion = 8705.665060 eV Total energy + Delta-G solvation = -1921.497484 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.46518 -35.58418 -33.19319 -31.23486 -28.27642 -25.75585 -24.21766 -21.07055 -20.02036 -17.06633 -16.39444 -15.02757 -14.31532 -14.03556 -13.83229 -12.86457 -12.75467 -12.49564 -12.10841 -11.92819 -11.52306 -11.13428 -10.97616 -10.73669 -10.53247 -10.35306 -10.18276 -9.45005 -9.05871 -8.52135 -7.74644 -6.12699 -4.16638 3.28579 3.35719 3.38187 3.38868 3.45005 4.37374 4.45825 5.01906 5.22251 5.49906 5.53809 5.76317 5.91719 5.94014 6.22540 6.31589 6.39635 6.64639 6.78209 7.23119 7.49421 7.66633 7.79616 7.84840 8.19821 8.25313 8.84576 9.48437 10.97097 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.037335 B = 0.015586 C = 0.012112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.780206 B = 1796.091978 C = 2311.112123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.524 5.524 3 C 0.048 3.952 4 C -0.007 4.007 5 H 0.120 0.880 6 C 0.240 3.760 7 N -0.474 5.474 8 C 0.057 3.943 9 H 0.039 0.961 10 C -0.515 4.515 11 H 0.063 0.937 12 C 0.064 3.936 13 N -0.889 5.889 14 Si 0.895 3.105 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.272 1.272 18 C 0.062 3.938 19 H 0.058 0.942 20 H 0.065 0.935 21 H 0.021 0.979 22 H 0.040 0.960 23 H 0.079 0.921 24 H 0.263 0.737 25 H 0.026 0.974 26 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.326 1.530 -5.537 7.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.248 5.248 3 C -0.081 4.081 4 C -0.029 4.029 5 H 0.138 0.862 6 C -0.077 4.077 7 N -0.150 5.150 8 C 0.037 3.963 9 H 0.057 0.943 10 C -0.553 4.553 11 H 0.081 0.919 12 C -0.139 4.139 13 N -0.527 5.527 14 Si 0.722 3.278 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.196 1.196 18 C -0.065 4.065 19 H 0.077 0.923 20 H 0.084 0.916 21 H 0.040 0.960 22 H 0.058 0.942 23 H 0.097 0.903 24 H 0.072 0.928 25 H 0.045 0.955 26 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.663 2.562 -5.147 6.817 hybrid contribution 0.264 -0.682 0.707 1.017 sum -3.399 1.880 -4.440 5.899 Atomic orbital electron populations 1.22455 0.89233 1.01640 0.99653 1.64836 1.06813 1.12975 1.40218 1.23109 0.93429 0.91467 1.00114 1.20132 0.95870 0.86713 1.00195 0.86238 1.29273 0.92287 0.93667 0.92423 1.81065 1.10158 1.13091 1.10723 1.19562 0.94312 0.90154 0.92322 0.94320 1.21090 1.05600 1.10238 1.18340 0.91889 1.24972 0.96211 0.97712 0.94978 1.69955 1.32504 1.30179 1.20063 0.86540 0.82551 0.80140 0.78521 1.20731 1.21181 1.19626 1.23097 0.95677 1.00715 0.87040 0.92297 0.91595 0.96024 0.94197 0.90300 0.92752 0.95518 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.41 60.07 0.57 0.85 15 2 N -0.52 -9.55 5.55 -238.72 -1.33 -10.88 15 3 C 0.05 0.81 5.97 -1.90 -0.01 0.79 15 4 C -0.01 -0.13 3.03 -91.54 -0.28 -0.41 15 5 H 0.12 2.18 7.68 -51.93 -0.40 1.78 15 6 C 0.24 4.80 14.58 -20.76 -0.30 4.49 15 7 N -0.47 -10.10 18.54 42.15 0.78 -9.32 15 8 C 0.06 1.32 2.43 -90.41 -0.22 1.10 15 9 H 0.04 1.00 7.83 -51.93 -0.41 0.59 15 10 C -0.51 -13.18 8.33 -34.44 -0.29 -13.46 15 11 H 0.06 1.58 7.55 -52.48 -0.40 1.18 15 12 C 0.06 1.68 5.12 -17.82 -0.09 1.59 15 13 N -0.89 -24.33 12.55 55.43 0.70 -23.63 15 14 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 15 15 H -0.28 -6.50 7.11 56.52 0.40 -6.09 15 16 H -0.29 -6.53 7.11 56.52 0.40 -6.13 15 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 18 C 0.06 1.35 5.60 -2.76 -0.02 1.33 15 19 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 20 H 0.07 0.95 8.14 -51.93 -0.42 0.53 15 21 H 0.02 0.32 7.99 -51.93 -0.41 -0.10 15 22 H 0.04 0.65 7.89 -51.93 -0.41 0.24 15 23 H 0.08 1.12 8.14 -51.93 -0.42 0.69 15 24 H 0.26 6.90 8.31 -40.82 -0.34 6.56 15 25 H 0.03 0.59 7.69 -51.93 -0.40 0.19 15 26 H 0.09 2.15 7.31 -51.93 -0.38 1.77 15 LS Contribution 228.64 15.07 3.45 3.45 Total: -1.00 -27.51 228.64 -5.27 -32.78 By element: Atomic # 1 Polarization: -0.96 SS G_CDS: -3.21 Total: -4.17 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -0.64 Total: -3.71 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 0.15 Total: -43.83 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -27.51 -5.27 -32.78 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259996679.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.544 kcal (2) G-P(sol) polarization free energy of solvation -27.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds