Wall clock time and date at job start Mon Mar 30 2020 02:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36340 * 125.63678 * 2 1 4 4 C 1.34841 * 108.22055 * 179.97438 * 3 2 1 5 5 C 1.40887 * 107.41870 * 0.02562 * 4 3 2 6 6 C 1.50704 * 126.29383 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.47173 * 160.02159 * 6 5 4 8 8 N 1.46903 * 109.46870 * 40.03022 * 6 5 4 9 9 C 1.50701 * 109.47444 * 280.02617 * 6 5 4 10 10 H 1.07999 * 119.99570 * 34.55603 * 9 6 5 11 11 C 1.37871 * 120.00163 * 214.55218 * 9 6 5 12 12 N 1.31507 * 120.00019 * 174.41667 * 11 9 6 13 13 Si 1.86805 * 119.99891 * 354.13659 * 11 9 6 14 14 H 1.48501 * 109.46516 * 94.10352 * 13 11 9 15 15 H 1.48500 * 109.47270 * 214.10105 * 13 11 9 16 16 H 1.48500 * 109.47454 * 334.10631 * 13 11 9 17 17 C 1.34854 * 107.41583 * 0.22814 * 5 4 3 18 18 H 1.09004 * 109.47008 * 90.02462 * 1 2 3 19 19 H 1.08994 * 109.46933 * 210.02199 * 1 2 3 20 20 H 1.08996 * 109.47019 * 330.02622 * 1 2 3 21 21 H 1.08001 * 125.88770 * 0.02562 * 3 2 1 22 22 H 1.08009 * 126.29411 * 179.97438 * 4 3 2 23 23 H 1.00898 * 111.00135 * 174.45165 * 8 6 5 24 24 H 1.00909 * 110.99721 * 298.39700 * 8 6 5 25 25 H 0.97004 * 120.00283 * 179.97438 * 12 11 9 26 26 H 1.08001 * 125.88949 * 179.75251 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5460 0.7045 0.0006 5 6 3.5460 -0.7044 0.0003 6 6 4.7607 -1.5964 0.0003 7 1 4.4819 -2.5900 0.3512 8 7 5.7830 -1.0315 0.8912 9 6 5.3122 -1.6942 -1.3988 10 1 5.2601 -0.8422 -2.0605 11 6 5.8832 -2.8712 -1.8341 12 7 6.2646 -2.9931 -3.0867 13 14 6.1223 -4.2899 -0.6426 14 1 4.9614 -5.2117 -0.7314 15 1 7.3653 -5.0242 -0.9902 16 1 6.2300 -3.7615 0.7411 17 6 2.2593 -1.1081 -0.0055 18 1 -0.3633 -0.0004 -1.0277 19 1 -0.3633 -0.8897 0.5142 20 1 -0.3633 0.8902 0.5134 21 1 1.9171 2.1324 0.0004 22 1 4.4166 1.3438 0.0003 23 1 6.5709 -1.6557 0.9792 24 1 6.0774 -0.1206 0.5722 25 1 6.6668 -3.8211 -3.3929 26 1 1.9172 -2.1324 -0.0110 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259997551.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:25 Heat of formation + Delta-G solvation = 26.521756 kcal Electronic energy + Delta-G solvation = -10521.281783 eV Core-core repulsion = 8599.817122 eV Total energy + Delta-G solvation = -1921.464661 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.78689 -36.68308 -34.06916 -32.74802 -29.77256 -28.06512 -26.84350 -23.51571 -20.98927 -20.04081 -19.03752 -17.86579 -16.48954 -16.01516 -15.82819 -14.80021 -14.62142 -14.28165 -13.68575 -13.54880 -13.24594 -12.91740 -12.79608 -12.61815 -12.40931 -11.79139 -11.37979 -10.84680 -9.41107 -9.04989 -8.66890 -8.31314 -6.36206 1.34050 1.37008 1.50148 1.55802 2.32312 2.34592 2.35854 3.07565 4.12745 4.31556 4.42391 4.47127 4.53911 4.71853 4.75598 4.96602 5.07513 5.49775 5.57531 5.80523 6.16900 6.33045 6.51226 6.63495 6.73933 6.80419 6.95872 7.32308 8.85900 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.056169 B = 0.012511 C = 0.012110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.378409 B = 2237.559050 C = 2311.542464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.457 5.457 3 C -0.018 4.018 4 C -0.220 4.220 5 C -0.142 4.142 6 C 0.246 3.754 7 H 0.037 0.963 8 N -0.839 5.839 9 C -0.536 4.536 10 H 0.020 0.980 11 C 0.012 3.988 12 N -0.948 5.948 13 Si 0.948 3.052 14 H -0.271 1.271 15 H -0.285 1.285 16 H -0.238 1.238 17 C -0.050 4.050 18 H 0.074 0.926 19 H 0.091 0.909 20 H 0.104 0.896 21 H 0.192 0.808 22 H 0.122 0.878 23 H 0.325 0.675 24 H 0.330 0.670 25 H 0.266 0.734 26 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.445 4.123 8.114 13.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.133 5.133 3 C -0.148 4.148 4 C -0.245 4.245 5 C -0.149 4.149 6 C 0.135 3.865 7 H 0.055 0.945 8 N -0.366 5.366 9 C -0.576 4.576 10 H 0.039 0.961 11 C -0.186 4.186 12 N -0.588 5.588 13 Si 0.771 3.229 14 H -0.196 1.196 15 H -0.211 1.211 16 H -0.161 1.161 17 C -0.179 4.179 18 H 0.093 0.907 19 H 0.110 0.890 20 H 0.123 0.877 21 H 0.209 0.791 22 H 0.140 0.860 23 H 0.136 0.864 24 H 0.141 0.859 25 H 0.075 0.925 26 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -11.355 3.974 8.579 14.776 hybrid contribution 1.140 -0.742 -1.166 1.792 sum -10.215 3.232 7.413 13.028 Atomic orbital electron populations 1.22221 0.75063 1.05684 1.03832 1.44049 1.07309 1.05089 1.56863 1.22103 0.89793 0.92543 1.10347 1.20786 0.96778 0.94496 1.12457 1.19731 0.93995 0.94962 1.06188 1.17592 0.87978 0.92491 0.88407 0.94458 1.59482 1.15821 1.07087 1.54228 1.21929 1.37903 0.98217 0.99543 0.96147 1.26040 0.94523 1.01401 0.96615 1.70100 1.43378 1.27969 1.17359 0.85734 0.77860 0.78645 0.80669 1.19647 1.21120 1.16067 1.21589 0.90211 0.92159 1.13965 0.90697 0.88983 0.87703 0.79088 0.86028 0.86372 0.85925 0.92542 0.82039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.38 11.12 127.77 1.42 2.80 15 2 N -0.46 -14.46 3.15 -547.92 -1.72 -16.18 15 3 C -0.02 -0.58 11.43 83.21 0.95 0.37 15 4 C -0.22 -9.04 10.27 22.14 0.23 -8.82 15 5 C -0.14 -6.50 5.10 -19.99 -0.10 -6.60 15 6 C 0.25 12.28 2.68 43.42 0.12 12.40 15 7 H 0.04 1.86 5.69 -2.39 -0.01 1.85 15 8 N -0.84 -37.73 9.11 -174.94 -1.59 -39.33 15 9 C -0.54 -31.74 9.11 25.60 0.23 -31.51 15 10 H 0.02 1.37 8.06 -2.91 -0.02 1.34 15 11 C 0.01 0.72 5.47 84.65 0.46 1.18 15 12 N -0.95 -60.26 13.96 21.44 0.30 -59.96 15 13 Si 0.95 44.48 26.60 68.60 1.82 46.31 15 14 H -0.27 -12.35 7.11 99.48 0.71 -11.65 15 15 H -0.29 -13.15 7.11 99.48 0.71 -12.44 15 16 H -0.24 -10.29 6.06 99.48 0.60 -9.69 15 17 C -0.05 -1.98 11.35 83.21 0.94 -1.03 15 18 H 0.07 1.31 8.14 -2.38 -0.02 1.29 15 19 H 0.09 1.49 8.14 -2.39 -0.02 1.47 15 20 H 0.10 1.40 8.14 -2.39 -0.02 1.38 15 21 H 0.19 4.50 8.06 -2.91 -0.02 4.47 15 22 H 0.12 4.90 7.76 -2.91 -0.02 4.87 15 23 H 0.33 14.18 7.78 -89.70 -0.70 13.48 15 24 H 0.33 14.45 8.31 -89.69 -0.75 13.70 15 25 H 0.27 15.72 8.31 -92.71 -0.77 14.95 15 26 H 0.16 5.81 8.06 -2.91 -0.02 5.79 15 Total: -1.00 -72.23 226.06 2.70 -69.54 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: -0.36 Total: 30.84 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: 4.25 Total: -31.21 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -3.02 Total: -115.47 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.82 Total: 46.31 kcal Total: -72.23 2.70 -69.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259997551.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.057 kcal (2) G-P(sol) polarization free energy of solvation -72.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds