Wall clock time and date at job start Mon Mar 30 2020 02:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36347 * 125.63911 * 2 1 4 4 C 1.34847 * 108.22158 * 179.75527 * 3 2 1 5 5 C 1.40895 * 107.41430 * 0.43290 * 4 3 2 6 6 C 1.50700 * 126.28971 * 179.82977 * 5 4 3 7 7 H 1.09001 * 109.47087 * 199.68938 * 6 5 4 8 8 N 1.46905 * 109.47121 * 319.68741 * 6 5 4 9 9 C 1.50698 * 109.47079 * 79.68455 * 6 5 4 10 10 H 1.08003 * 120.00217 * 0.02562 * 9 6 5 11 11 C 1.37879 * 120.00029 * 179.97438 * 9 6 5 12 12 N 1.31516 * 119.99980 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 120.00103 * 180.02562 * 11 9 6 14 14 H 1.48498 * 109.47036 * 60.00317 * 13 11 9 15 15 H 1.48500 * 109.46831 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47009 * 300.00091 * 13 11 9 17 17 C 1.34848 * 107.41899 * 359.56405 * 5 4 3 18 18 H 1.08994 * 109.47521 * 269.96368 * 1 2 3 19 19 H 1.09004 * 109.46818 * 29.96546 * 1 2 3 20 20 H 1.08998 * 109.47252 * 149.95790 * 1 2 3 21 21 H 1.08000 * 125.88869 * 0.02936 * 3 2 1 22 22 H 1.07999 * 126.29281 * 180.29515 * 4 3 2 23 23 H 1.00901 * 110.99869 * 60.00289 * 8 6 5 24 24 H 1.00896 * 110.99543 * 183.95412 * 8 6 5 25 25 H 0.96999 * 120.00171 * 179.97438 * 12 11 9 26 26 H 1.07992 * 125.89048 * 180.24124 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5460 0.7045 0.0055 5 6 3.5460 -0.7045 -0.0012 6 6 4.7607 -1.5965 -0.0020 7 1 4.4818 -2.5898 -0.3537 8 7 5.7829 -1.0308 -0.8926 9 6 5.3123 -1.6953 1.3969 10 1 4.8311 -1.1656 2.2058 11 6 6.4306 -2.4629 1.6443 12 7 7.0162 -3.1084 0.6594 13 14 7.1139 -2.5860 3.3785 14 1 6.0802 -3.1577 4.2784 15 1 8.3109 -3.4649 3.3776 16 1 7.4942 -1.2330 3.8579 17 6 2.2593 -1.1081 -0.0007 18 1 -0.3634 -0.0007 1.0276 19 1 -0.3633 0.8903 -0.5133 20 1 -0.3633 -0.8896 -0.5145 21 1 1.9172 2.1325 0.0004 22 1 4.4165 1.3437 0.0114 23 1 6.0585 -0.1094 -0.5875 24 1 6.5820 -1.6432 -0.9607 25 1 7.8032 -3.6481 0.8334 26 1 1.9172 -2.1324 -0.0012 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259997553.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:27 Heat of formation + Delta-G solvation = 25.692753 kcal Electronic energy + Delta-G solvation = -10494.704070 eV Core-core repulsion = 8573.203461 eV Total energy + Delta-G solvation = -1921.500609 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.75843 -36.65566 -33.83425 -32.33307 -29.70256 -27.91940 -26.77013 -23.74002 -20.87850 -20.07659 -18.46186 -17.79330 -16.51167 -15.84967 -15.76243 -14.72128 -14.61271 -14.01620 -13.56005 -13.39007 -13.16187 -12.87383 -12.78380 -12.59483 -12.34658 -11.87816 -11.47227 -10.65164 -9.20763 -9.04433 -8.74310 -8.01506 -6.30278 1.38557 1.39918 1.48256 1.57468 2.31481 2.35725 2.50847 3.10712 4.15920 4.34569 4.51098 4.54840 4.71537 4.75891 4.90548 5.02922 5.30183 5.57240 5.71895 5.90791 6.12830 6.38048 6.56598 6.73430 6.81468 7.05764 7.20705 7.46918 8.88988 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.061399 B = 0.011480 C = 0.010761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.924261 B = 2438.483848 C = 2601.336292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.457 5.457 3 C -0.016 4.016 4 C -0.218 4.218 5 C -0.144 4.144 6 C 0.272 3.728 7 H -0.001 1.001 8 N -0.840 5.840 9 C -0.553 4.553 10 H 0.041 0.959 11 C 0.017 3.983 12 N -0.920 5.920 13 Si 0.960 3.040 14 H -0.275 1.275 15 H -0.279 1.279 16 H -0.273 1.273 17 C -0.051 4.051 18 H 0.078 0.922 19 H 0.104 0.896 20 H 0.089 0.911 21 H 0.194 0.806 22 H 0.121 0.879 23 H 0.315 0.685 24 H 0.340 0.660 25 H 0.266 0.734 26 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.639 6.286 0.138 12.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.134 5.134 3 C -0.147 4.147 4 C -0.244 4.244 5 C -0.151 4.151 6 C 0.162 3.838 7 H 0.017 0.983 8 N -0.367 5.367 9 C -0.593 4.593 10 H 0.059 0.941 11 C -0.182 4.182 12 N -0.561 5.561 13 Si 0.785 3.215 14 H -0.200 1.200 15 H -0.205 1.205 16 H -0.199 1.199 17 C -0.180 4.180 18 H 0.096 0.904 19 H 0.122 0.878 20 H 0.108 0.892 21 H 0.211 0.789 22 H 0.139 0.861 23 H 0.125 0.875 24 H 0.154 0.846 25 H 0.075 0.925 26 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -11.470 6.083 -0.492 12.992 hybrid contribution 1.329 -0.442 1.709 2.209 sum -10.140 5.641 1.216 11.667 Atomic orbital electron populations 1.22213 0.75064 1.05549 1.03920 1.44054 1.07271 1.05037 1.57001 1.22109 0.89691 0.92514 1.10343 1.20776 0.96728 0.94396 1.12464 1.19962 0.94211 0.95154 1.05770 1.17149 0.87116 0.90342 0.89232 0.98263 1.59401 1.17161 1.06236 1.53915 1.22103 1.11984 1.29229 0.95944 0.94078 1.25795 0.96983 0.94423 1.01025 1.69857 1.21524 1.31772 1.32913 0.85593 0.77660 0.78044 0.80168 1.20020 1.20458 1.19862 1.21551 0.90223 0.91984 1.14261 0.90394 0.87783 0.89245 0.78937 0.86137 0.87538 0.84617 0.92456 0.82399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.40 11.12 127.77 1.42 2.82 15 2 N -0.46 -14.70 3.15 -547.93 -1.72 -16.43 15 3 C -0.02 -0.54 11.43 83.21 0.95 0.41 15 4 C -0.22 -9.23 10.25 22.14 0.23 -9.00 15 5 C -0.14 -6.93 5.06 -19.99 -0.10 -7.04 15 6 C 0.27 15.13 3.16 43.42 0.14 15.27 15 7 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 15 8 N -0.84 -44.57 9.10 -174.94 -1.59 -46.17 15 9 C -0.55 -32.33 8.71 25.60 0.22 -32.11 15 10 H 0.04 2.44 7.74 -2.91 -0.02 2.42 15 11 C 0.02 0.96 5.38 84.65 0.46 1.42 15 12 N -0.92 -53.78 11.54 21.45 0.25 -53.53 15 13 Si 0.96 44.91 29.54 68.60 2.03 46.93 15 14 H -0.27 -12.64 7.11 99.48 0.71 -11.93 15 15 H -0.28 -12.61 7.11 99.48 0.71 -11.90 15 16 H -0.27 -12.52 7.11 99.48 0.71 -11.81 15 17 C -0.05 -2.09 11.35 83.21 0.94 -1.15 15 18 H 0.08 1.31 8.14 -2.39 -0.02 1.29 15 19 H 0.10 1.42 8.14 -2.39 -0.02 1.40 15 20 H 0.09 1.51 8.14 -2.39 -0.02 1.49 15 21 H 0.19 4.54 8.06 -2.91 -0.02 4.51 15 22 H 0.12 5.03 7.73 -2.91 -0.02 5.00 15 23 H 0.32 16.03 8.25 -89.69 -0.74 15.29 15 24 H 0.34 19.04 7.08 -89.70 -0.63 18.41 15 25 H 0.27 14.72 8.31 -92.71 -0.77 13.95 15 26 H 0.16 6.01 8.06 -2.91 -0.02 5.99 15 Total: -1.00 -67.53 228.89 3.02 -64.51 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: -0.19 Total: 34.06 kcal Atomic # 6 Polarization: -33.63 SS G_CDS: 4.26 Total: -29.38 kcal Atomic # 7 Polarization: -113.06 SS G_CDS: -3.07 Total: -116.13 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -67.53 3.02 -64.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259997553.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.202 kcal (2) G-P(sol) polarization free energy of solvation -67.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds