Wall clock time and date at job start Mon Mar 30 2020 02:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47161 * 2 1 4 4 C 1.50703 * 109.46787 * 239.99931 * 2 1 3 5 5 H 1.07998 * 120.00348 * 239.99742 * 4 2 1 6 6 C 1.37876 * 119.99863 * 60.00209 * 4 2 1 7 7 N 1.31515 * 120.00290 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00143 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46812 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47372 * 119.99948 * 8 6 4 11 11 H 1.48493 * 109.47203 * 240.00343 * 8 6 4 12 12 C 1.50697 * 109.47156 * 120.00316 * 2 1 3 13 13 C 1.34675 * 125.99161 * 34.99649 * 12 2 1 14 14 N 1.36874 * 106.81768 * 179.73552 * 13 12 2 15 15 C 1.46504 * 126.39529 * 179.97438 * 14 13 12 16 16 C 1.35046 * 107.21025 * 0.02562 * 14 13 12 17 17 N 1.30499 * 108.69457 * 359.97438 * 16 14 13 18 18 H 1.08998 * 109.46968 * 59.99623 * 1 2 3 19 19 H 1.09001 * 109.47161 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.46467 * 300.00162 * 1 2 3 21 21 H 0.96996 * 120.00626 * 179.97438 * 7 6 4 22 22 H 1.07999 * 126.58848 * 359.75440 * 13 12 2 23 23 H 1.09006 * 109.46843 * 90.00355 * 15 14 13 24 24 H 1.09001 * 109.46928 * 209.99634 * 15 14 13 25 25 H 1.08996 * 109.47351 * 329.99857 * 15 14 13 26 26 H 1.08000 * 125.65569 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 3.1472 -2.2864 -3.6039 10 1 1.1676 -1.5865 -4.8165 11 1 3.1471 -0.1858 -4.8161 12 6 2.0324 -0.7105 1.2304 13 6 1.4546 -1.7736 1.8218 14 7 2.2360 -2.1021 2.8964 15 6 2.0000 -3.1974 3.8403 16 6 3.2646 -1.2275 2.9249 17 7 3.1363 -0.3983 1.9254 18 1 -0.3633 0.5139 -0.8899 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3632 0.5139 0.8900 21 1 0.7095 1.1619 -3.4843 22 1 0.5490 -2.2714 1.5081 23 1 2.4935 -4.1001 3.4801 24 1 2.4025 -2.9284 4.8170 25 1 0.9286 -3.3786 3.9262 26 1 4.0613 -1.2160 3.6539 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260008349.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:23 Heat of formation + Delta-G solvation = 34.691352 kcal Electronic energy + Delta-G solvation = -10534.912823 eV Core-core repulsion = 8613.802422 eV Total energy + Delta-G solvation = -1921.110401 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.73164 -36.50144 -34.55570 -32.73188 -29.34939 -27.50928 -27.14826 -23.72973 -21.78253 -20.53268 -18.33587 -17.73386 -16.49643 -16.30099 -15.16067 -14.85108 -14.63168 -14.26439 -13.56188 -13.36335 -13.27632 -12.83051 -12.65007 -12.24106 -12.06107 -11.68361 -11.09786 -10.68573 -10.39369 -10.23367 -9.03311 -8.05897 -6.20666 1.33646 1.41273 1.42423 1.54743 2.17696 2.37070 2.56321 3.19098 3.95949 4.10670 4.22739 4.53172 4.69901 4.76102 4.88623 5.04101 5.12173 5.29007 5.46924 5.59990 5.87776 5.98694 6.19063 6.39240 6.60769 6.86093 7.44410 7.47420 8.98532 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.061200 B = 0.011604 C = 0.011005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.405003 B = 2412.392955 C = 2543.801816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.112 3.888 3 H -0.011 1.011 4 C -0.516 4.516 5 H 0.039 0.961 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.960 3.040 9 H -0.273 1.273 10 H -0.272 1.272 11 H -0.280 1.280 12 C 0.008 3.992 13 C -0.068 4.068 14 N -0.467 5.467 15 C 0.071 3.929 16 C 0.172 3.828 17 N -0.553 5.553 18 H 0.060 0.940 19 H 0.040 0.960 20 H 0.023 0.977 21 H 0.263 0.737 22 H 0.181 0.819 23 H 0.084 0.916 24 H 0.112 0.888 25 H 0.094 0.906 26 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.354 -8.991 11.289 14.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.092 3.908 3 H 0.007 0.993 4 C -0.554 4.554 5 H 0.058 0.942 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.785 3.215 9 H -0.198 1.198 10 H -0.197 1.197 11 H -0.206 1.206 12 C -0.120 4.120 13 C -0.200 4.200 14 N -0.151 5.151 15 C -0.070 4.070 16 C -0.110 4.110 17 N -0.273 5.273 18 H 0.079 0.921 19 H 0.059 0.941 20 H 0.042 0.958 21 H 0.072 0.928 22 H 0.198 0.802 23 H 0.102 0.898 24 H 0.131 0.869 25 H 0.112 0.888 26 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 0.769 -8.385 11.096 13.929 hybrid contribution -0.187 -0.685 -0.812 1.078 sum 0.583 -9.069 10.284 13.724 Atomic orbital electron populations 1.21559 0.96558 0.99545 0.99638 1.16998 0.93009 0.92823 0.87938 0.99307 1.21289 1.30809 1.11948 0.91391 0.94220 1.25746 0.95322 0.95792 1.01758 1.70025 1.37785 1.24021 1.24004 0.85478 0.78310 0.78456 0.79207 1.19787 1.19681 1.20574 1.21280 0.93796 0.98248 0.98629 1.22439 1.01675 1.02345 0.93545 1.45562 1.20306 1.26353 1.22909 1.22315 1.04661 0.87569 0.92418 1.25639 0.95255 0.89689 1.00453 1.70074 1.20341 1.28776 1.08067 0.92116 0.94098 0.95781 0.92803 0.80216 0.89792 0.86905 0.88774 0.74190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.89 8.55 71.98 0.62 -5.27 15 2 C 0.11 6.37 2.75 -12.28 -0.03 6.34 15 3 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 15 4 C -0.52 -31.04 8.55 25.60 0.22 -30.82 15 5 H 0.04 2.42 7.74 -2.91 -0.02 2.40 15 6 C 0.01 0.70 5.30 84.65 0.45 1.14 15 7 N -0.92 -55.45 11.32 21.45 0.24 -55.20 15 8 Si 0.96 45.78 29.54 68.60 2.03 47.81 15 9 H -0.27 -12.84 7.11 99.48 0.71 -12.13 15 10 H -0.27 -12.29 7.11 99.48 0.71 -11.58 15 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 15 12 C 0.01 0.41 5.96 41.39 0.25 0.66 15 13 C -0.07 -2.71 10.73 83.09 0.89 -1.82 15 14 N -0.47 -14.22 3.15 -552.52 -1.74 -15.96 15 15 C 0.07 1.14 11.18 127.77 1.43 2.57 15 16 C 0.17 5.80 12.56 180.26 2.26 8.07 15 17 N -0.55 -26.09 11.25 -188.31 -2.12 -28.21 15 18 H 0.06 3.40 6.07 -2.39 -0.01 3.38 15 19 H 0.04 1.91 7.28 -2.39 -0.02 1.89 15 20 H 0.02 1.10 8.14 -2.38 -0.02 1.08 15 21 H 0.26 14.86 8.31 -92.71 -0.77 14.09 15 22 H 0.18 6.41 7.37 -2.91 -0.02 6.39 15 23 H 0.08 1.16 8.14 -2.38 -0.02 1.14 15 24 H 0.11 1.12 8.14 -2.39 -0.02 1.10 15 25 H 0.09 1.28 8.14 -2.39 -0.02 1.26 15 26 H 0.24 5.31 8.06 -2.91 -0.02 5.29 15 Total: -1.00 -75.15 227.71 5.64 -69.51 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: 1.15 Total: 1.19 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: 6.08 Total: -19.13 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -3.62 Total: -99.37 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -75.15 5.64 -69.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260008349.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.201 kcal (2) G-P(sol) polarization free energy of solvation -75.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds