Wall clock time and date at job start Mon Mar 30 2020 02:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47316 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47182 * 120.00052 * 9 7 5 12 12 H 1.48492 * 109.47189 * 240.00072 * 9 7 5 13 13 C 1.50695 * 109.47196 * 64.99596 * 3 2 1 14 14 C 1.39870 * 126.03799 * 60.03186 * 13 3 2 15 15 N 1.30838 * 108.20287 * 179.97438 * 14 13 3 16 16 N 1.40085 * 108.20691 * 359.97438 * 15 14 13 17 17 H 0.96993 * 126.04025 * 180.02562 * 16 15 14 18 18 C 1.34953 * 107.92318 * 359.75903 * 16 15 14 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 22 22 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 23 23 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 24 24 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 25 25 H 1.08004 * 125.90139 * 359.94476 * 14 13 3 26 26 H 1.08000 * 126.13089 * 180.23880 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5987 1.5463 -0.1942 11 1 6.4971 -0.5175 -1.4628 12 1 6.3990 1.6166 -2.6101 13 6 1.6413 2.1163 1.2876 14 6 2.0081 1.7126 2.5755 15 7 1.4719 2.5432 3.4325 16 7 0.7462 3.5036 2.7159 17 1 0.2462 4.2423 3.0967 18 6 0.8707 3.2228 1.4018 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 1.8934 -0.5137 0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 3.8293 -0.0604 -2.9502 25 1 2.6268 0.8619 2.8204 26 1 0.4315 3.7796 0.5873 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260052094.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:19 Heat of formation + Delta-G solvation = 58.335783 kcal Electronic energy + Delta-G solvation = -10664.740196 eV Core-core repulsion = 8744.655095 eV Total energy + Delta-G solvation = -1920.085101 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.33980 -34.90956 -31.63184 -30.54694 -29.21862 -26.53517 -23.05623 -21.17859 -20.60346 -18.86489 -16.90519 -15.87156 -14.54465 -13.89454 -13.70123 -13.24186 -12.71369 -12.29385 -11.87922 -11.47841 -11.09774 -10.78598 -10.64124 -10.20670 -9.78554 -9.62200 -9.33613 -8.90204 -8.84967 -8.26353 -7.43343 -5.93101 -3.98658 2.64691 3.33233 3.41547 3.46024 3.61477 3.76939 4.50332 5.36221 5.67323 5.70404 6.33279 6.37790 6.44100 6.57475 6.68819 6.91450 7.05937 7.23666 7.48291 7.58968 7.81890 7.98599 8.03165 8.21241 8.41733 8.56277 9.04963 9.65474 11.11770 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.046574 B = 0.014402 C = 0.012134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.046543 B = 1943.682903 C = 2307.001947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C 0.111 3.889 4 H 0.030 0.970 5 C -0.501 4.501 6 H 0.055 0.945 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.286 1.286 13 C -0.169 4.169 14 C 0.058 3.942 15 N -0.320 5.320 16 N -0.496 5.496 17 H 0.427 0.573 18 C 0.018 3.982 19 H 0.029 0.971 20 H 0.041 0.959 21 H 0.034 0.966 22 H 0.032 0.968 23 H 0.093 0.907 24 H 0.258 0.742 25 H 0.176 0.824 26 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.423 2.837 4.200 6.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C 0.092 3.908 4 H 0.048 0.952 5 C -0.540 4.540 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.180 4.180 14 C -0.128 4.128 15 N -0.144 5.144 16 N -0.206 5.206 17 H 0.269 0.731 18 C -0.127 4.127 19 H 0.049 0.951 20 H 0.060 0.940 21 H 0.054 0.946 22 H 0.051 0.949 23 H 0.112 0.888 24 H 0.068 0.932 25 H 0.193 0.807 26 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -4.524 3.021 5.229 7.545 hybrid contribution 0.859 0.200 -0.884 1.249 sum -3.664 3.221 4.345 6.533 Atomic orbital electron populations 1.21806 0.99559 0.98841 0.99838 1.21563 0.91400 0.99834 1.02167 1.17257 0.95101 0.91194 0.87258 0.95185 1.21224 0.91145 1.36642 1.04949 0.92639 1.24957 0.97814 0.95481 0.95834 1.69889 1.34540 1.39094 1.09526 0.86584 0.86199 0.77616 0.77903 1.19861 1.21095 1.21190 1.20899 1.01770 0.97726 0.97604 1.23734 0.98924 0.98642 0.91501 1.77113 1.13653 1.02772 1.20845 1.46088 1.43754 1.25943 1.04765 0.73123 1.22309 1.03546 1.00099 0.86721 0.95140 0.93979 0.94642 0.94947 0.88830 0.93152 0.80736 0.81857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.73 37.16 0.36 -2.51 15 2 C -0.11 -2.61 5.19 -26.73 -0.14 -2.75 15 3 C 0.11 2.72 2.14 -92.92 -0.20 2.52 15 4 H 0.03 0.79 8.11 -51.93 -0.42 0.37 15 5 C -0.50 -13.52 8.42 -34.44 -0.29 -13.81 15 6 H 0.06 1.52 7.73 -52.49 -0.41 1.11 15 7 C 0.06 1.62 5.29 -17.82 -0.09 1.53 15 8 N -0.89 -24.95 11.29 55.43 0.63 -24.33 15 9 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 15 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 15 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 13 C -0.17 -3.63 3.72 -105.05 -0.39 -4.02 15 14 C 0.06 1.20 11.42 -17.36 -0.20 1.00 15 15 N -0.32 -6.27 12.70 30.63 0.39 -5.88 15 16 N -0.50 -8.28 7.36 30.45 0.22 -8.06 15 17 H 0.43 5.33 8.96 -182.62 -1.64 3.69 15 18 C 0.02 0.32 11.88 -17.22 -0.20 0.12 15 19 H 0.03 0.55 8.14 -51.93 -0.42 0.13 15 20 H 0.04 0.83 8.14 -51.93 -0.42 0.40 15 21 H 0.03 0.68 7.38 -51.93 -0.38 0.30 15 22 H 0.03 0.74 7.88 -51.93 -0.41 0.33 15 23 H 0.09 2.45 5.95 -51.93 -0.31 2.14 15 24 H 0.26 6.92 8.31 -40.82 -0.34 6.58 15 25 H 0.18 3.41 8.06 -52.48 -0.42 2.99 15 26 H 0.16 2.51 8.06 -52.49 -0.42 2.09 15 LS Contribution 226.72 15.07 3.42 3.42 Total: -1.00 -29.40 226.72 -5.91 -35.31 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -4.39 Total: 1.30 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -1.15 Total: -17.91 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 1.24 Total: -38.26 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -29.40 -5.91 -35.31 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260052094.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.646 kcal (2) G-P(sol) polarization free energy of solvation -29.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds