Wall clock time and date at job start Mon Mar 30 2020 02:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47316 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47182 * 120.00052 * 9 7 5 12 12 H 1.48492 * 109.47189 * 240.00072 * 9 7 5 13 13 C 1.50695 * 109.47196 * 64.99596 * 3 2 1 14 14 C 1.39870 * 126.03799 * 60.03186 * 13 3 2 15 15 N 1.30838 * 108.20287 * 179.97438 * 14 13 3 16 16 N 1.40085 * 108.20691 * 359.97438 * 15 14 13 17 17 H 0.96993 * 126.04025 * 180.02562 * 16 15 14 18 18 C 1.34953 * 107.92318 * 359.75903 * 16 15 14 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 22 22 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 23 23 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 24 24 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 25 25 H 1.08004 * 125.90139 * 359.94476 * 14 13 3 26 26 H 1.08000 * 126.13089 * 180.23880 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5987 1.5463 -0.1942 11 1 6.4971 -0.5175 -1.4628 12 1 6.3990 1.6166 -2.6101 13 6 1.6413 2.1163 1.2876 14 6 2.0081 1.7126 2.5755 15 7 1.4719 2.5432 3.4325 16 7 0.7462 3.5036 2.7159 17 1 0.2462 4.2423 3.0967 18 6 0.8707 3.2228 1.4018 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 1.8934 -0.5137 0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 3.8293 -0.0604 -2.9502 25 1 2.6268 0.8619 2.8204 26 1 0.4315 3.7796 0.5873 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260052094.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:18 Heat of formation + Delta-G solvation = 39.847197 kcal Electronic energy + Delta-G solvation = -10665.541922 eV Core-core repulsion = 8744.655095 eV Total energy + Delta-G solvation = -1920.886826 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.85963 -36.76442 -33.60955 -32.05659 -30.84306 -28.39100 -24.95560 -22.72559 -22.29663 -20.47962 -18.64698 -17.73447 -16.47621 -15.50984 -15.27373 -14.90032 -14.55378 -13.93068 -13.56664 -13.19355 -12.99449 -12.63591 -12.49005 -12.00463 -11.53584 -11.45454 -11.18044 -10.81233 -10.33788 -10.30125 -9.03890 -7.98808 -6.11141 1.15555 1.43787 1.46971 1.57221 2.14740 2.28289 2.52491 3.27122 4.12729 4.33455 4.67155 4.71615 4.88189 4.92641 5.06812 5.25623 5.36205 5.48824 5.65308 5.76127 5.91774 6.10697 6.27856 6.52323 6.67139 6.95083 6.99796 7.55805 9.04005 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.046574 B = 0.014402 C = 0.012134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.046543 B = 1943.682903 C = 2307.001947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.107 4.107 3 C 0.117 3.883 4 H 0.006 0.994 5 C -0.515 4.515 6 H 0.044 0.956 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.946 3.054 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.282 1.282 13 C -0.206 4.206 14 C 0.046 3.954 15 N -0.330 5.330 16 N -0.473 5.473 17 H 0.449 0.551 18 C 0.040 3.960 19 H 0.046 0.954 20 H 0.041 0.959 21 H 0.043 0.957 22 H 0.028 0.972 23 H 0.062 0.938 24 H 0.259 0.741 25 H 0.175 0.825 26 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.926 3.657 4.784 7.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.146 4.146 3 C 0.097 3.903 4 H 0.024 0.976 5 C -0.554 4.554 6 H 0.063 0.937 7 C -0.183 4.183 8 N -0.555 5.555 9 Si 0.773 3.227 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.208 1.208 13 C -0.217 4.217 14 C -0.139 4.139 15 N -0.154 5.154 16 N -0.185 5.185 17 H 0.295 0.705 18 C -0.106 4.106 19 H 0.065 0.935 20 H 0.060 0.940 21 H 0.062 0.938 22 H 0.047 0.953 23 H 0.081 0.919 24 H 0.068 0.932 25 H 0.192 0.808 26 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -5.039 3.860 5.844 8.628 hybrid contribution 0.969 0.007 -1.042 1.423 sum -4.071 3.867 4.803 7.388 Atomic orbital electron populations 1.21648 0.96833 1.00101 1.00186 1.21416 0.93830 0.98987 1.00331 1.17038 0.93506 0.91681 0.88062 0.97568 1.21509 0.92868 1.36354 1.04626 0.93720 1.25625 1.01624 0.95363 0.95722 1.70006 1.35947 1.39675 1.09877 0.85684 0.81659 0.77614 0.77738 1.19773 1.20704 1.20820 1.20682 1.04674 0.99793 0.96593 1.23750 0.99507 0.99208 0.91453 1.77073 1.14132 1.03200 1.20997 1.46088 1.42513 1.25633 1.04233 0.70532 1.22650 1.01500 0.98635 0.87838 0.93450 0.93976 0.93777 0.95349 0.91924 0.93152 0.80827 0.78766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 9.73 71.98 0.70 -4.36 15 2 C -0.11 -5.05 5.19 30.60 0.16 -4.89 15 3 C 0.12 5.71 2.14 -12.28 -0.03 5.69 15 4 H 0.01 0.33 8.11 -2.39 -0.02 0.31 15 5 C -0.52 -28.05 8.42 25.60 0.22 -27.84 15 6 H 0.04 2.47 7.73 -2.91 -0.02 2.45 15 7 C 0.01 0.81 5.29 84.66 0.45 1.26 15 8 N -0.91 -51.85 11.29 21.45 0.24 -51.61 15 9 Si 0.95 43.62 29.54 68.60 2.03 45.65 15 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 15 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 15 12 H -0.28 -12.77 7.11 99.48 0.71 -12.07 15 13 C -0.21 -8.63 3.72 -20.14 -0.08 -8.70 15 14 C 0.05 1.86 11.42 85.24 0.97 2.84 15 15 N -0.33 -12.23 12.70 -57.02 -0.72 -12.95 15 16 N -0.47 -14.32 7.36 -57.59 -0.42 -14.74 15 17 H 0.45 9.48 8.96 -213.34 -1.91 7.57 15 18 C 0.04 1.36 11.88 83.54 0.99 2.35 15 19 H 0.05 1.65 8.14 -2.39 -0.02 1.63 15 20 H 0.04 1.60 8.14 -2.39 -0.02 1.59 15 21 H 0.04 1.62 7.38 -2.38 -0.02 1.60 15 22 H 0.03 1.30 7.88 -2.39 -0.02 1.28 15 23 H 0.06 3.33 5.95 -2.39 -0.01 3.32 15 24 H 0.26 14.00 8.31 -92.71 -0.77 13.23 15 25 H 0.17 6.82 8.06 -2.91 -0.02 6.79 15 26 H 0.20 5.26 8.06 -2.91 -0.02 5.24 15 Total: -1.00 -61.86 226.72 3.77 -58.09 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -0.74 Total: 9.21 kcal Atomic # 6 Polarization: -37.04 SS G_CDS: 3.39 Total: -33.66 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -0.91 Total: -79.30 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -61.86 3.77 -58.09 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260052094.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.942 kcal (2) G-P(sol) polarization free energy of solvation -61.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds