Wall clock time and date at job start Mon Mar 30 2020 02:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46685 * 2 1 4 4 C 1.50703 * 109.47081 * 120.00244 * 2 1 3 5 5 H 1.08000 * 119.99926 * 119.99997 * 4 2 1 6 6 C 1.37876 * 119.99996 * 299.99956 * 4 2 1 7 7 N 1.31522 * 120.00192 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99938 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46993 * 60.00139 * 8 6 4 10 10 H 1.48504 * 109.46745 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46936 * 299.99722 * 8 6 4 12 12 C 1.50696 * 109.46958 * 240.00488 * 2 1 3 13 13 C 1.35316 * 126.12483 * 275.28748 * 12 2 1 14 14 C 1.39870 * 107.92161 * 180.15089 * 13 12 2 15 15 N 1.30836 * 108.20019 * 359.59732 * 14 13 12 16 16 N 1.34942 * 126.12855 * 95.00039 * 12 2 1 17 17 C 1.46502 * 126.03991 * 359.97438 * 16 12 2 18 18 H 1.09006 * 109.47133 * 179.97438 * 1 2 3 19 19 H 1.09002 * 109.47281 * 299.99475 * 1 2 3 20 20 H 1.09002 * 109.46863 * 59.99614 * 1 2 3 21 21 H 0.96995 * 120.00160 * 179.97438 * 7 6 4 22 22 H 1.07998 * 126.04386 * 0.03102 * 13 12 2 23 23 H 1.08002 * 125.90382 * 179.86983 * 14 13 12 24 24 H 1.09002 * 109.47159 * 269.97891 * 17 16 12 25 25 H 1.08999 * 109.46542 * 29.97403 * 17 16 12 26 26 H 1.08999 * 109.47324 * 149.97201 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8296 2.6035 8 14 2.3226 -1.1197 4.0079 9 1 3.8075 -1.1191 4.0076 10 1 1.8279 -0.4194 5.2204 11 1 1.8280 -2.5199 4.0080 12 6 2.0323 -0.7103 -1.2305 13 6 2.2033 -2.0457 -1.3669 14 6 2.6874 -2.2881 -2.6565 15 7 2.7947 -1.1403 -3.2752 16 7 2.3871 -0.1291 -2.3955 17 6 2.3517 1.3058 -2.6889 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 0.7081 1.1607 3.4845 22 1 2.0033 -2.7922 -0.6126 23 1 2.9267 -3.2560 -3.0716 24 1 1.3779 1.5682 -3.1025 25 1 2.5200 1.8685 -1.7707 26 1 3.1307 1.5483 -3.4116 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260065973.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:19 Heat of formation + Delta-G solvation = 48.413956 kcal Electronic energy + Delta-G solvation = -10679.175402 eV Core-core repulsion = 8758.660058 eV Total energy + Delta-G solvation = -1920.515344 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.95859 -36.37584 -34.03889 -32.97058 -29.57278 -27.49489 -27.19643 -23.78745 -21.85339 -20.33790 -18.07967 -17.61906 -16.38179 -16.21008 -15.28482 -14.88879 -14.33846 -13.88268 -13.64131 -13.31527 -13.10449 -12.84488 -12.77225 -12.47053 -12.18734 -11.86909 -11.32819 -11.03597 -10.49549 -9.98325 -9.22436 -8.12551 -6.24824 1.13309 1.46359 1.47063 1.54698 1.82699 2.10501 2.45974 3.17518 3.84844 4.16271 4.40743 4.44301 4.58840 4.67421 4.88353 4.99044 5.09721 5.12771 5.34921 5.60433 5.80399 5.93495 5.96919 6.18345 6.40620 6.80059 6.95411 7.43140 8.93315 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.056025 B = 0.013310 C = 0.011838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.659050 B = 2103.170008 C = 2364.683745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.100 3.900 3 H 0.018 0.982 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.958 3.042 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.270 1.270 12 C 0.111 3.889 13 C -0.296 4.296 14 C 0.045 3.955 15 N -0.342 5.342 16 N -0.391 5.391 17 C 0.097 3.903 18 H 0.030 0.970 19 H 0.070 0.930 20 H 0.025 0.975 21 H 0.264 0.736 22 H 0.140 0.860 23 H 0.213 0.787 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.301 -1.457 -5.693 6.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.080 3.920 3 H 0.036 0.964 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.181 4.181 7 N -0.555 5.555 8 Si 0.783 3.217 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.195 1.195 12 C -0.016 4.016 13 C -0.325 4.325 14 C -0.140 4.140 15 N -0.164 5.164 16 N -0.174 5.174 17 C -0.044 4.044 18 H 0.049 0.951 19 H 0.089 0.911 20 H 0.044 0.956 21 H 0.073 0.927 22 H 0.158 0.842 23 H 0.230 0.770 24 H 0.101 0.899 25 H 0.103 0.897 26 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.550 -0.588 -6.706 6.908 hybrid contribution -0.033 -0.627 1.671 1.786 sum 1.517 -1.216 -5.034 5.397 Atomic orbital electron populations 1.21581 0.96365 0.99502 1.00147 1.17402 0.93367 0.94084 0.87165 0.96389 1.21321 1.31584 1.12816 0.90606 0.92306 1.25669 0.95112 0.95665 1.01693 1.69970 1.37266 1.23864 1.24366 0.85608 0.78625 0.78898 0.78542 1.19989 1.20813 1.19468 1.21957 0.96271 0.94623 0.88798 1.21327 1.16393 0.95294 0.99504 1.24256 0.98695 0.97827 0.93212 1.77081 1.25289 0.96367 1.17672 1.48731 1.51616 1.07629 1.09416 1.21978 1.04327 0.74535 1.03524 0.95108 0.91143 0.95644 0.92688 0.84228 0.77044 0.89918 0.89665 0.88056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.60 8.95 71.98 0.64 -4.95 15 2 C 0.10 4.96 2.50 -12.28 -0.03 4.93 15 3 H 0.02 0.95 6.95 -2.39 -0.02 0.93 15 4 C -0.52 -28.21 8.25 25.60 0.21 -28.00 15 5 H 0.06 3.15 6.84 -2.91 -0.02 3.13 15 6 C 0.02 0.95 5.30 84.65 0.45 1.40 15 7 N -0.92 -50.60 11.32 21.45 0.24 -50.36 15 8 Si 0.96 42.45 29.54 68.60 2.03 44.48 15 9 H -0.27 -12.00 7.11 99.48 0.71 -11.29 15 10 H -0.28 -12.24 7.11 99.48 0.71 -11.54 15 11 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 12 C 0.11 5.02 5.85 41.40 0.24 5.26 15 13 C -0.30 -12.50 9.70 21.99 0.21 -12.28 15 14 C 0.05 1.63 12.03 85.24 1.03 2.66 15 15 N -0.34 -13.48 12.58 -57.02 -0.72 -14.20 15 16 N -0.39 -15.80 4.01 -356.03 -1.43 -17.22 15 17 C 0.10 3.01 11.27 127.77 1.44 4.45 15 18 H 0.03 1.43 8.14 -2.38 -0.02 1.41 15 19 H 0.07 3.64 6.07 -2.39 -0.01 3.63 15 20 H 0.02 1.06 8.14 -2.39 -0.02 1.04 15 21 H 0.26 13.90 8.31 -92.71 -0.77 13.13 15 22 H 0.14 5.82 7.66 -2.91 -0.02 5.80 15 23 H 0.21 5.60 8.06 -2.91 -0.02 5.57 15 24 H 0.08 2.26 8.14 -2.39 -0.02 2.24 15 25 H 0.08 2.68 6.97 -2.39 -0.02 2.66 15 26 H 0.10 2.62 8.14 -2.39 -0.02 2.61 15 Total: -1.00 -60.91 226.04 5.48 -55.43 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 1.16 Total: 8.40 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: 4.19 Total: -26.53 kcal Atomic # 7 Polarization: -79.88 SS G_CDS: -1.90 Total: -81.78 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -60.91 5.48 -55.43 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260065973.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.847 kcal (2) G-P(sol) polarization free energy of solvation -60.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds